Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04101 ATGAGAGAAAATATGGATGCAAAACGATTCCACTCCGTCGTCGACGCTGACATCGAGGTTGCGCTTCAGAAAGCAGAAACTGCTTCTAAGGAGAAAAATAGGGCTTCAATTGTAGCGATCAATGCCGAGATTCGTCGTACTAAGGCTAGGTTACTGGAAGAGATCCCTAAGTTGCATAGATTGGCAGTAAAAAAGGTAAAGGGGCTTCCGTCGCAAGAATTTGCTGCCCGTAATGATTTGGTTCTTTCATTGCCAGAGAGGATCCAAGCAATCCCGGATGGGACTCCTGCTGCTCCCAAACAAACTGGAGGTTGGGGAGCTTGCTGCCTCACGTCCAGAAATGGTCGATTCGATGATGGATACTTTGACCAAACTGAAGAATCAAGTCAGTTTAGGCAGGAGTATGAAATGCGTAAAATGAAACAGGATCAAGGTTTGGATGTGATTGCAGAAGGATTGGATACTTTGAAAAACATGGCACACGATATGAATGAGGAATTTGATAAGCAAGTTCCACTGATGGATGAGATTGATACAAAGGTGGACAAGGCATCCTCTGACCTTAAAAATACCAATGTTAGACTTAAAGACACAGTTACCCAGCTACGATCCACTCGAAACTTCTGTATTGATATTGTTTTATTGATTATAATTTTGGGAATTGCTGCCTATTTGTACAATGTGCTAAAATGA 693 0.4228 MRENMDAKRFHSVVDADIEVALQKAETASKEKNRASIVAINAEIRRTKARLLEEIPKLHRLAVKKVKGLPSQEFAARNDLVLSLPERIQAIPDGTPAAPKQTGGWGACCLTSRNGRFDDGYFDQTEESSQFRQEYEMRKMKQDQGLDVIAEGLDTLKNMAHDMNEEFDKQVPLMDEIDTKVDKASSDLKNTNVRLKDTVTQLRSTRNFCIDIVLLIIILGIAAYLYNVLK 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04101 230 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 136 198 IPR000727 -
Trre14g04101 230 PANTHER SYNTAXIN 11 218 IPR045242 -
Trre14g04101 230 Gene3D - 136 197 - -
Trre14g04101 230 Pfam SNARE domain 173 222 IPR000727 -
Trre14g04101 230 SMART tSNARE_6 131 198 IPR000727 -
Trre14g04101 230 SUPERFAMILY SNARE fusion complex 129 196 - -
Trre14g04101 230 CDD SNARE_Qc 141 196 - -
Trre14g04101 230 FunFam Putative syntaxin-71-like 136 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04101 Trre-Chr14 49553728 49557710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04101 9 230 SNARE and Associated Proteins AT3G09740 71.616 1.07e-119 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04101 K08506 - gmx:100819272 346.28