Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04099 ATGGGGCATAGACACCTATATAATGCATCATCTCCAATGTTTGAGGGTGAGGCTGACCAGAATTGGAATCATATGCTTACTGATCAACATCATGTGAACCATGGGGGGACCAGCTCTTCAGAGAATGGTTCTTTTAATTATCCTGTGGAAAATGTATCCATAGATAACATTTATTTCCCCTCTCATTGGAACGCCAACACAACGTCAAATGGATATGTATCCTCTGGCCTCAACATTGAAGTACCTCCTCGCCCTCATCAATTGGATACACCAGGCACTTCTAACAATCATTTTATGCATTCATCTAGTGCTGGACCTTTATTTACAGTGTCTGAAAATTATGCACACCAGCCTTCTTCTTCTTCCAATTATGACAGACAAGCATTTCATGTTGATAGTGGTTTTATTGATCTTACAATGGGAAGTGGACGAGGACATCACAAGAGAAAGAGCCCTGGAATTCCTTCAGTATATGAGAGAGGCAGTTCAAGTGGATATTTCAATGCTGGGAGTTCAACTGATATTCCTATGCCTTCAGAATCACGGCCAGAGAAGCCAAATATGGATTCTCAATATATGCCTTGGGATCATGTTGCTATGGCACCCACTTTTAGAGGTGCTGGCCTCTCAATGAAGGGTGAGAGTTCTGTAAGGAATGTGAGGAGCCGTTCTGCACTTGATTTGGAATCCAACCTGTCTAGGACCCATTTGTCAAGTAACCATTCACACAACTCGTACCCTAATGTCCAGCCAGTCGGCCATTCTAGCTTGGCGGGTCTTTCAGCTCAGGTTTCTACCTCTTTGACAAGGGATTGGAGCCAAATGAACGCAACTCCTGCTAATGGAAGAGTGTTATTATCAGATACTAGTACTTTTGGTCTTGAGACAAGTCACTTCCCTGTTGGAAATGCTGCTACTACTGCTGCTAGTAATGCTACTTTAGATGTTGGAAGCTTCCATCATGAATATGGTACAAGCAGAAATCCTACTACTGCTCAAAGTTTTCAAAATTTGACTCAGACTGCGAGGGGAACGCGAAGTAATTACTCTCAAAGATCCGCTCCAGCTTATAGGGCTTCTTCAAGCTTGCGTCTGGGACATGCGCCTTCAGATAATAATGGATTGCCCATGGTAGCTGAAAGTCACCCTTCTAGACATCCTAGGCCGTTGACCACTATTGGCTGGCGGAACAGTGATAGAAATGGAAGGTCAAGAATTTCTAATGAAAGATATAGAGCATTGGCTGATGAAGCTAGTCTCCATGCTAGATTTGCTTCTGAGGTACCGGGTTTCATGATTGTTGAGCGTGCTTCACTATATGGTTCTAGGAATATGCTTGATCAGCACAGAGACATGAGGTTGGACGTAGATAGCATGAGCTATGAGGAACTACTTGCACTTGGGGAGAGGATTGGCCAGGTGAACACAGGATTGTCCGAGGATGCGGTTTCCAAGTGTTTGACGGAAACAATATATTGTTCATCTGACCAATGTCAGGATGAAGGAAGCTGTGTGATCTGTCTGGAAGAGTACAAGAACATGGATGATGTTGGGACACTTAAAACTTGTGGACATGACTACCATGTGAGCTGCATTAAAAAGTGGTTATCTATGAAGAAACTATGTCCTATCTGCAAAGCTTCTGCTTTGCCAGAGGATAAGAAGGATAAATAA 1674 0.4325 MGHRHLYNASSPMFEGEADQNWNHMLTDQHHVNHGGTSSSENGSFNYPVENVSIDNIYFPSHWNANTTSNGYVSSGLNIEVPPRPHQLDTPGTSNNHFMHSSSAGPLFTVSENYAHQPSSSSNYDRQAFHVDSGFIDLTMGSGRGHHKRKSPGIPSVYERGSSSGYFNAGSSTDIPMPSESRPEKPNMDSQYMPWDHVAMAPTFRGAGLSMKGESSVRNVRSRSALDLESNLSRTHLSSNHSHNSYPNVQPVGHSSLAGLSAQVSTSLTRDWSQMNATPANGRVLLSDTSTFGLETSHFPVGNAATTAASNATLDVGSFHHEYGTSRNPTTAQSFQNLTQTARGTRSNYSQRSAPAYRASSSLRLGHAPSDNNGLPMVAESHPSRHPRPLTTIGWRNSDRNGRSRISNERYRALADEASLHARFASEVPGFMIVERASLYGSRNMLDQHRDMRLDVDSMSYEELLALGERIGQVNTGLSEDAVSKCLTETIYCSSDQCQDEGSCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKLCPICKASALPEDKKDK 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04099 557 SMART ring_2 504 545 IPR001841 -
Trre14g04099 557 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 469 550 IPR013083 -
Trre14g04099 557 Pfam Ring finger domain 503 546 IPR001841 -
Trre14g04099 557 SUPERFAMILY RING/U-box 495 550 - -
Trre14g04099 557 CDD RING-H2_RNF24-like 504 549 - -
Trre14g04099 557 MobiDBLite consensus disorder prediction 142 186 - -
Trre14g04099 557 MobiDBLite consensus disorder prediction 341 358 - -
Trre14g04099 557 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 469 550 - -
Trre14g04099 557 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 98 550 IPR045191 GO:0061630
Trre14g04099 557 ProSiteProfiles Zinc finger RING-type profile. 504 546 IPR001841 -
Trre14g04099 557 MobiDBLite consensus disorder prediction 157 178 - -
Trre14g04099 557 MobiDBLite consensus disorder prediction 341 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04099 Trre-Chr14 49538591 49541055 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04099 1 556 C3H Transcription Factor Family AT2G37150 41.519 2.18e-108 333