Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04098 ATGGGGCATAGACACCTATATAATGCATCATCTCCAATGTTTGAGGGTGAGGCTGACCAGAATTGGAATCATATGCTTACTGATCAACATCATGTGAACCATGGGGGGACCAGCTCTTCAGAGAATGGTTCTTTTAATTATCCTGTGGAAAATGTATCCATAGATAACATTTATTTCCCCTCTCATTGGAACGCCAACACAACGTCAAATGGATATGTATCCTCTGGCCTCAACATTGAAGTACCTCCTCGCCCTCATCAATTGGATACACCAGGCACTTCTAACAATCATTTTATGCATTCATCTAGTGCTGGACCTTTATTTACAGTGTCTGAAAATTATGCACACCAGCCTTCTTCTTCTTCCAATTATGACAGACAAGCATTTCATGTTGATAGTGGTTTTATTGATCTTACAATGGGAAGTGGACGAGGACATCACAAGAGAAAGAGCCCTGGAATTCCTTCAGTATATGAGAGAGGCAGTTCAAGTGGATATTTCAATGCTGGGAGTTCAACTGATATTCCTATGCCTTCAGAATCACGGCCAGAGAAGCCAAATATGGATTCTCAATATATGCCTTGGGATCATGTTGCTATGGCACCCACTTTTAGAGGTGCTGGCCTCTCAATGAAGGGTGAGAGTTCTGTAAGGAATGTGAGGAGCCGTTCTGCACTTGATTTGGAATCCAACCTGTCTAGGACCCATTTGTCAAGTAACCATTCACACAACTCGTACCCTAATGTCCAGCCAGTCGGCCATTCTAGCTTGGCGGGTCTTTCAGCTCAGGTTTCTACCTCTTTGACAAGGGATTGGAGCCAAATGAACGCAACTCCTGCTAATGGAAGAGTGTTATTATCAGATACTAGTACTTTTGGTCTTGAGACAAGTCACTTCCCTGTTGGAAATGCTGCTACTACTGCTGCTAGTAATGCTACTTTAGATGTTGGAAGCTTCCATCATGAATATGGTACAAGCAGAAATCCTACTACTGCTCAAAGTTTTCAAAATTTGACTCAGACTGCGAGGGGAACGCGAAGTAATTACTCTCAAAGATCCGCTCCAGCTTATAGGGCTTCTTCAAGCTTGCGTCTGGGACATGCGCCTTCAGATAATAATGGATTGCCCATGGTAGCTGAAAGTCACCCTTCTAGACATCCTAGGCCGTTGACCACTATTGGCTGGCGGAACAGTGATAGAAATGGAAGGTCAAGAATTTCTAATGAAAGATATAGAGCATTGGCTGATGAAGCTAGTCTCCATGCTAGATTTGCTTCTGAGGGTTTCATGATTGTTGAGCGTGCTTCACTATATGGTTCTAGGAATATGCTTGATCAGCACAGAGACATGAGGTTGGACGTAGATAGCATGAGCTATGAGGAACTACTTGCACTTGGGGAGAGGATTGGCCAGGTGAACACAGGATTGTCCGAGGATGCGGTTTCCAAGTGTTTGACGGAAACAATATATTGTTCATCTGACCAATGTCAGGATGAAGGAAGCTGTGTGATCTGTCTGGAAGAGTACAAGAACATGGATGATGTTGGGACACTTAAAACTTGTGGACATGACTACCATGTGAGCTGCATTAAAAAGTGGTTATCTATGAAGAAACTATGTCCTATCTGCAAAGCTTCTGCTTTGCCAGAGGATAAGAAGGATAAATAA 1668 0.4317 MGHRHLYNASSPMFEGEADQNWNHMLTDQHHVNHGGTSSSENGSFNYPVENVSIDNIYFPSHWNANTTSNGYVSSGLNIEVPPRPHQLDTPGTSNNHFMHSSSAGPLFTVSENYAHQPSSSSNYDRQAFHVDSGFIDLTMGSGRGHHKRKSPGIPSVYERGSSSGYFNAGSSTDIPMPSESRPEKPNMDSQYMPWDHVAMAPTFRGAGLSMKGESSVRNVRSRSALDLESNLSRTHLSSNHSHNSYPNVQPVGHSSLAGLSAQVSTSLTRDWSQMNATPANGRVLLSDTSTFGLETSHFPVGNAATTAASNATLDVGSFHHEYGTSRNPTTAQSFQNLTQTARGTRSNYSQRSAPAYRASSSLRLGHAPSDNNGLPMVAESHPSRHPRPLTTIGWRNSDRNGRSRISNERYRALADEASLHARFASEGFMIVERASLYGSRNMLDQHRDMRLDVDSMSYEELLALGERIGQVNTGLSEDAVSKCLTETIYCSSDQCQDEGSCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKLCPICKASALPEDKKDK 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04098 555 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 467 548 - -
Trre14g04098 555 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 467 548 IPR013083 -
Trre14g04098 555 ProSiteProfiles Zinc finger RING-type profile. 502 544 IPR001841 -
Trre14g04098 555 Pfam Ring finger domain 501 544 IPR001841 -
Trre14g04098 555 SUPERFAMILY RING/U-box 493 548 - -
Trre14g04098 555 CDD RING-H2_RNF24-like 502 547 - -
Trre14g04098 555 MobiDBLite consensus disorder prediction 142 186 - -
Trre14g04098 555 MobiDBLite consensus disorder prediction 341 358 - -
Trre14g04098 555 SMART ring_2 502 543 IPR001841 -
Trre14g04098 555 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 98 548 IPR045191 GO:0061630
Trre14g04098 555 MobiDBLite consensus disorder prediction 341 402 - -
Trre14g04098 555 MobiDBLite consensus disorder prediction 157 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04098 Trre-Chr14 49538591 49541055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04098 1 554 C3H Transcription Factor Family AT2G37150 41.741 2.53e-110 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04098 - - tpra:123892936 1085.86