Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre14g04095 | ATGGCCGATAAAGTCCCTCCTAACGCGAATGCTGGATCTCAAGGGTTCAACCCAGGCTTAATAGTTCTTCTGGTTGTTGGAGGGTTGCTATTGACATTCCTCATCGGAAATTATGTGCTCTACGCTTATGCACAAAAGACCATCCCTCCTAGAAAAAAGAAGCCGGTCTCCAAAAAGAAGATGAAAAAGGAGAGACTGAAGCAAGGAGTCTCTGCACCTGGAGAGTAG | 228 | 0.4605 | MADKVPPNANAGSQGFNPGLIVLLVVGGLLLTFLIGNYVLYAYAQKTIPPRKKKPVSKKKMKKERLKQGVSAPGE | 75 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre14g04095 | 75 | PANTHER | DNA-BINDING PROTEIN S1FA2 | 9 | 75 | IPR006779 | GO:0003677|GO:0005634|GO:0006355 | |
| Trre14g04095 | 75 | MobiDBLite | consensus disorder prediction | 51 | 65 | - | - | |
| Trre14g04095 | 75 | Pfam | DNA binding protein S1FA | 12 | 75 | IPR006779 | GO:0003677|GO:0005634|GO:0006355 | |
| Trre14g04095 | 75 | MobiDBLite | consensus disorder prediction | 50 | 75 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre14g04095 | Trre-Chr14 | 49522828 | 49524143 | Dispersed/Proximal |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | S1Fa-like | Trre14g04095 | S1FA | 5.6e-40 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre14g04095 | - | - | tpra:123892939 | 129.413 |