Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04088 ATGGCTAACGACTCGTCGTTTTTATTCGCCGGCATTCGTTTTGATAGAAAGAAATTCGGCGCCGATATTGCCAGATTTCAGAAAAAAGATACCGACAACAGTTTGGTGAAGATTCAGAGTGTGACAGAAGATGAAGAAAATAAGGAAACAATAGAAGCTGTGTCTGCAAAGAAGAGGAAGCGCAAGAAAACCTCTTCCGAAGCGGTTGATGGATTCAGTGTGTTTCGAAGTTCCACATCCAAGTCAAACAAAGAAGTCAAAGTCAATGACGACAACGATGAGTCCACTCGGCTGAAGAAAGAACAAAATAAGCAACTCGAGCGAGATGCTATCTTCAGGAAGAATCATAACATTCATGTCTCTGGTTACAATGTGCCGTCCCCACTTCAAAGCTTTGACGAGTTGAATACAAGATATAAATGTCCGTCCTATTTATTGCGGAATCTGGCAGAACTTGGATTCAGAGAACCAACACCAATCCAACAACAGGCTATTCCAGTACTCTTACAGGATCGTGAATGTTTTGCATGTGCCCCAACTGGTTCTGGAAAAACCCTTGCATTTGTGGTTCCCATGCTCATGAAGCTCAAGGCTCATGCAAAAGGTGGTGTTCGGGCTGTTATAATTTGTCATAGCCGTGAATTATCTGGTCAAACATATCGAGAGTGCAAAAAGCTTGCCAAAGGGGAAAAGTTCCGTATCAAGTTAATGACAAAACATCTTTTAAGAAATGCTGATTTTTCAAAATTTTCTTGTGACATACTTATATCCACGCCACTTCGATTACGTTTGGCTATCAAGAAGAAAAAGGTTGATCTCAGCAGAGTTGAGTATCTTGTCCTTGATGAATCTGATAAGCTATTTGAGCCTGGATTGTTCACGCAGATTGATTCTATTATCAAAGCATGTACAAATCCCTCAATAATACGCTCTCTGTTCAGTGCTACTTTACCTGATTTTGTTGAAGATCGTGCACGAGAACTCATGCATGATGCTGTTCGGGTAATTGTTGGCAGGAAGAATATGGCTTCTGAAACAATTAAGCAAAAGTTAGTTTTTACGGGAAGCGAAGAAGGAAAACTTATAGCTATTCGGCAAAGTTTTGCAGAGAGTTTAAATCCTCCAGTATTGATCTTTGTCCAAAAAAAGGAGCGAGCCGTGGAGCTTTATGGGGAACTTGCATTCGACAATATTAGAGTTGATGTCATCCATTCTGATTTGTCTCAAGAAGAGCGAGAAAATGCAGTTGACAACTTCAGAGCTGGTAAAACATGGGTTTTGATTGCCACTGATGTGGTTGCTCGGGGGATGGATTTCAAAGGCATCAACTGTGTGATCAATTTTGATTTCCCAGATTCTGCATCGGCATATATCCACAGAATTGGTCGTTCTGGCAGAGCAGGGAGGAGTGGCGAAGCGATTACATTTTACACAGAGGAGGATATTCCATTCTTGCGAAATGTAGCTAATCTAATGGCATCCTCAGGCTGTGAAGTTCCATCCTGGTTGATGGAGTTGCAGAAAAAGAAGTGGAAGAAGCACCGGCCCAGAAGAGATTCTATCTCAACCAAACCTGTAGATCAAAAAGAAAAACTCAACAAAACCTGA 1608 0.4136 MANDSSFLFAGIRFDRKKFGADIARFQKKDTDNSLVKIQSVTEDEENKETIEAVSAKKRKRKKTSSEAVDGFSVFRSSTSKSNKEVKVNDDNDESTRLKKEQNKQLERDAIFRKNHNIHVSGYNVPSPLQSFDELNTRYKCPSYLLRNLAELGFREPTPIQQQAIPVLLQDRECFACAPTGSGKTLAFVVPMLMKLKAHAKGGVRAVIICHSRELSGQTYRECKKLAKGEKFRIKLMTKHLLRNADFSKFSCDILISTPLRLRLAIKKKKVDLSRVEYLVLDESDKLFEPGLFTQIDSIIKACTNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLIAIRQSFAESLNPPVLIFVQKKERAVELYGELAFDNIRVDVIHSDLSQEERENAVDNFRAGKTWVLIATDVVARGMDFKGINCVINFDFPDSASAYIHRIGRSGRAGRSGEAITFYTEEDIPFLRNVANLMASSGCEVPSWLMELQKKKWKKHRPRRDSISTKPVDQKEKLNKT 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04088 535 MobiDBLite consensus disorder prediction 510 535 - -
Trre14g04088 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 480 IPR027417 -
Trre14g04088 535 Gene3D - 335 512 IPR027417 -
Trre14g04088 535 Gene3D - 73 334 IPR027417 -
Trre14g04088 535 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 47 515 - -
Trre14g04088 535 MobiDBLite consensus disorder prediction 47 68 - -
Trre14g04088 535 MobiDBLite consensus disorder prediction 520 535 - -
Trre14g04088 535 Pfam DEAD/DEAH box helicase 158 322 IPR011545 GO:0003676|GO:0005524
Trre14g04088 535 Pfam Helicase conserved C-terminal domain 370 468 IPR001650 -
Trre14g04088 535 CDD SF2_C_DEAD 347 477 - -
Trre14g04088 535 MobiDBLite consensus disorder prediction 83 102 - -
Trre14g04088 535 CDD DEADc_DDX52 145 338 IPR044764 GO:0003724|GO:0005524|GO:0030490
Trre14g04088 535 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 346 507 IPR001650 -
Trre14g04088 535 SMART ultradead3 153 350 IPR014001 -
Trre14g04088 535 SMART helicmild6 387 468 IPR001650 -
Trre14g04088 535 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 134 162 IPR014014 GO:0003724
Trre14g04088 535 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 165 335 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04088 Trre-Chr14 49466278 49472081 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04088 128 506 Eukaryotic Initiation Factors Gene Family AT3G19760 30.709 7.21e-53 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04088 K14779 - gmx:100800969 867.07