Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04085 ATGGGGAAGAAGGGAAATTGGTTTTCTACAGTGAAGAAAGCTCTCAGCCCTGATTCAAAGAAATCAAGTAAATCAAAGAAGAAATGGTTTGGGAAGCAAAAATTGCAGACTTCAGACCCTTCTTTAGAAACCGATACAGCACCGCCTCTTCCTCCGCCGGAAGATATTAAATTAACTGATATTGAAAATCAAACCAGTCACCATAATGTTGCTGAAATTACAACTGCCGTGGTTGATGAGAAACCTGGTCCTTCTGTTCAGGCAGCAGTTATTAGGACCGGACCTGTCTTAGTTTCTCGTTTTGCCGGTAAACAAAAGGATGAAGTGGCTGCAATCAAGATTCAGACAGCTTTTCGGGGATACTTGGCGAGAAGAGCGTTGCGGGCTTTACGAGGGCTGGTCAGATTGAAAACATTGATGGAAGGGCCCATTGTAAAACGGCAAGCCATGAGTACTCTCCGCTCAATGCAGACGTTAGCTCGTGTTCAATCTCAGATTCGTTCTAGGAGGGTTAGAATGTTAGAGGAGAATCAGGCTTTGCAGAGACAGCTCTTACAGAAGCATGCACGAGAACTTGAGACCATGCGGATTGGAGAGGAATGGGATGCTAGCCTACAATCAAAAGAACAAATTGAAGCCAAATTATTGAGCAAGTATGAGGCTACTATGAGAAGAGAAAGAGCATTGGCTTATGCATTCACTCATCAGCAAAATGGGAAGAACTCGTCTAGATCTATGAATCCAATGTTCGTGGATCCAACCAATCCTACATGGGGATGGAGCTGGCTAGAACGATGGATGGCTGCCCGACCTTGGGAGAGCCGTGGCCTTGCCGATAAAGAACTGAATGACCATTCATCCATTAAAAGTTCAAGCCGCAGCATTACTGGTGGAGAAATCAGCAAATCGTTTGCTCGTTTCCAGCTAAATTCCGAAATACATTCTCCAGCAGCGAGCCAAAATCCCGGCTCACCTAGCGTTCAGTCCAATTCAACTCCTACTAAGCCAGCTTCTGCAGGAGCTGCAAGGAAACTGAATAAGGCGAGTCCAAAGGGAAGCTGGGTTATGGACGATGACTCAAAAAGCATGGCCAGTGTACAGTCAGATCGGTTCCGTAGGCACTCTATTGCCGGGTCATCAGTTAGAGATGATGAGAGTCTTGCTAGCTCTCCATCAGTTCCGAGTTATATGGTGCCAACTCAATCTGCGAAAGCTAGGTCGAGAACACAGAGTCAAAGTCCATTAGCTAAAGAAAATGGTAAACAAGAAAAGGGATCCTTTGGGACTGCAAAGAAGCGTCTTTCTTTCCCGGCTTCACCCGCCAGGCCAAGGCGTCATTCAGGTCCGCCAAAGGTAGAAACCGCGATAAATGCAGAGTTCGCAGTGGACAATGGTGTGGCAAGTTGA 1407 0.4627 MGKKGNWFSTVKKALSPDSKKSSKSKKKWFGKQKLQTSDPSLETDTAPPLPPPEDIKLTDIENQTSHHNVAEITTAVVDEKPGPSVQAAVIRTGPVLVSRFAGKQKDEVAAIKIQTAFRGYLARRALRALRGLVRLKTLMEGPIVKRQAMSTLRSMQTLARVQSQIRSRRVRMLEENQALQRQLLQKHARELETMRIGEEWDASLQSKEQIEAKLLSKYEATMRRERALAYAFTHQQNGKNSSRSMNPMFVDPTNPTWGWSWLERWMAARPWESRGLADKELNDHSSIKSSSRSITGGEISKSFARFQLNSEIHSPAASQNPGSPSVQSNSTPTKPASAGAARKLNKASPKGSWVMDDDSKSMASVQSDRFRRHSIAGSSVRDDESLASSPSVPSYMVPTQSAKARSRTQSQSPLAKENGKQEKGSFGTAKKRLSFPASPARPRRHSGPPKVETAINAEFAVDNGVAS 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04085 468 MobiDBLite consensus disorder prediction 315 468 - -
Trre14g04085 468 ProSiteProfiles IQ motif profile. 107 135 IPR000048 GO:0005515
Trre14g04085 468 Pfam IQ calmodulin-binding motif 110 128 IPR000048 GO:0005515
Trre14g04085 468 PANTHER IQ-DOMAIN 5-RELATED 1 439 - -
Trre14g04085 468 SMART iq_5 106 128 IPR000048 GO:0005515
Trre14g04085 468 MobiDBLite consensus disorder prediction 315 337 - -
Trre14g04085 468 MobiDBLite consensus disorder prediction 1 55 - -
Trre14g04085 468 Gene3D - 87 133 - -
Trre14g04085 468 MobiDBLite consensus disorder prediction 382 419 - -
Trre14g04085 468 Pfam Protein of unknown function (DUF4005) 372 444 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04085 Trre-Chr14 49449073 49451678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04085 1 468 IQD Protein Family AT5G03040 51.943 2.80e-145 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04085 - - gmx:100800080 676.011