Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04081 ATGGGAGCGGCTCGCAAGATGAGGAAACAACGGATTAAGCAACGGTGGGCGGATAAGCAATACAAAAAATCTCATTTAGGGAAAGAATGGAACAAGCCTTTTGCTGGATCATCTCATGCCAAGGGGATTGTTCTTGAAAAGATTGGTATTGAGGCTAAGCAGCCTAACTCTGCTATTCGAAAATGTGCTCGAGTTCAACTCATCAAAAATGGGAAGAAGATAGCTGCATTTGTGCCAAATGATGGTTGCTTAAATTACATTGAAGAGAATGATGAAGTTTTGATTGCTGGATTTGGACGTAAAGGTCACGCCGTGGGTGATATTCCTGGTGTTAGATTCAAGGTTGTGAAGGTTTCTGGTGTGTCTCTCTTGGCTCTTTTCAAGGAGAAGAAGGAGAAGCCTAGGTCTTAA 411 0.4258 MGAARKMRKQRIKQRWADKQYKKSHLGKEWNKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04081 136 Gene3D - 19 136 IPR012340 -
Trre14g04081 136 CDD Ribosomal_S23 20 133 IPR005680 GO:0003735|GO:0006412|GO:0015935
Trre14g04081 136 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 3 136 IPR006032 GO:0003735|GO:0005840|GO:0006412
Trre14g04081 136 Pfam Ribosomal protein S12/S23 28 135 IPR006032 GO:0003735|GO:0005840|GO:0006412
Trre14g04081 136 NCBIfam 30S ribosomal protein S12 3 135 IPR005680 GO:0003735|GO:0006412|GO:0015935
Trre14g04081 136 MobiDBLite consensus disorder prediction 1 33 - -
Trre14g04081 136 MobiDBLite consensus disorder prediction 1 16 - -
Trre14g04081 136 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 9 136 IPR006032 GO:0003735|GO:0005840|GO:0006412
Trre14g04081 136 FunFam 40S ribosomal protein S23 19 136 - -
Trre14g04081 136 ProSitePatterns Ribosomal protein S12 signature. 53 60 IPR006032 GO:0003735|GO:0005840|GO:0006412
Trre14g04081 136 SUPERFAMILY Nucleic acid-binding proteins 14 134 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04081 Trre-Chr14 49415708 49416304 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04081 1 136 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 94.118 7.52e-92 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04081 K02973 - ini:109163307 261.536