Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04073 ATGTTGGATCTCAATCTCAACGCTCATTCCACTTTCGATAACTACACTTTCCCACTCTCCGCCACCGCCCAAATGGAAAGCTCCGGTAGCTTTGATTCCTCCGTCGTCAACACCGCCGACACTGAAGATTCTTCCTCTTACGGCGATGCCTACGCTTACAACTTCGCCATACTCAACAACAACAACAACGAAAACAGTTTCGTTGACAACACTACAATCTCCGGTGAACTTCAACATTCCGGCGCCGGTGAATCTGGTGTACGGACAATTCAACTTTTTCCTGCTAACGAATCAAGATTAATCTCGCCGTCTGAGAATAGAGGATGGATGAATTTCCCGTCGGATCATCACGGCGGTGTAACGGAGCAGACTGTTGTTGTTGCTCCACGACCACAGCAAGTGAAGAAGAGTCGCCGTGGACCGAGGTCGCGAAGCTCACAGTATCGTGGCGTTACTTTCTACCGGAGAACAGGACGATGGGAATCGCATATTTGGGATTGCGGAAAACAAGTGTACTTAGGTGGATTTGACACTGCACATGCTGCTGCAAGAGCTTATGATCGAGCTGCGATCAAGTTTCGTGGAGTTGATGCGGATATAAATTTCAATGTGAGCGATTATGATGAAGATATCAAGCAGATGAGTAACTTTACCAAGGAAGAGTTTGTGCATATTCTGCGGAGACAGAGTACTGGTTTCTCAAGGGGAAGCTCCAAATACAGGGGAGTTACTCTGCATAAATGTGGAAGATGGGAAGCTCGTATGGGACAGTTTCTTGGGAAGAAGTATATATATCTTGGGCTTTTCGATAGCGAGCTAGATGCTGCAAGAGCATATGATAAGGCTGCTATAAAATGCAATGGAAGAGAAGCAGTAACAAATTTTGAGGCTAGTACTTATGAAGGAGAGTTAATTTCCCAGTGTGATAATGAAGATAGTAAGCAGAATCTTGATCTGAACTTGGCTATAGCTCCTCCTTCTAACTCTGATGTTCAAATGATGAACATGCAACACAATGGAAGTGGTTTACAAGTTCAGCGTAGCTGGGATGATATGCCTGTTGATAAGAGTGTTATGTTTGAGGACTCTGGGTCAAGATCAGTCAATGTTCAGTCATCTTATGGTTTTTCCATAGCATCTGAGCATCAACCTCCAGTTTGGAGGGGTAACAATTACTTTCCCATGTGTAAGGAAAGAGCAATAGAGAATAGGATGGAATCTTCTCCAGTTCCAAATTGGGCATGGCAACTACAAAGTCCTTATAATAATGGGTCAACTTTGATTCCACCTAATTTCTCTGCTGCAGCATCATCAGGATTCCCTTCAACTACAACAATACCATCAGCTGCGGATAGTCAAATTCATTTTGCAAACATGAATTTCCACCCTCATTTTCCTCCTCAAATGACTAACTCCACCACCATACCCCCTTTCTACTGCAGGAGCTGA 1449 0.4417 MLDLNLNAHSTFDNYTFPLSATAQMESSGSFDSSVVNTADTEDSSSYGDAYAYNFAILNNNNNENSFVDNTTISGELQHSGAGESGVRTIQLFPANESRLISPSENRGWMNFPSDHHGGVTEQTVVVAPRPQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELDAARAYDKAAIKCNGREAVTNFEASTYEGELISQCDNEDSKQNLDLNLAIAPPSNSDVQMMNMQHNGSGLQVQRSWDDMPVDKSVMFEDSGSRSVNVQSSYGFSIASEHQPPVWRGNNYFPMCKERAIENRMESSPVPNWAWQLQSPYNNGSTLIPPNFSAAASSGFPSTTTIPSAADSQIHFANMNFHPHFPPQMTNSTTIPPFYCRS 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04073 482 SUPERFAMILY DNA-binding domain 146 205 IPR016177 GO:0003677
Trre14g04073 482 CDD AP2 238 298 IPR001471 GO:0003700|GO:0006355
Trre14g04073 482 ProSiteProfiles AP2/ERF domain profile. 147 203 IPR001471 GO:0003700|GO:0006355
Trre14g04073 482 Gene3D AP2/ERF domain 146 205 IPR036955 GO:0003700|GO:0006355
Trre14g04073 482 Gene3D AP2/ERF domain 238 297 IPR036955 GO:0003700|GO:0006355
Trre14g04073 482 ProSiteProfiles AP2/ERF domain profile. 239 296 IPR001471 GO:0003700|GO:0006355
Trre14g04073 482 SMART rav1_2 147 209 IPR001471 GO:0003700|GO:0006355
Trre14g04073 482 SMART rav1_2 239 302 IPR001471 GO:0003700|GO:0006355
Trre14g04073 482 FunFam AP2-like ethylene-responsive transcription factor 146 205 - -
Trre14g04073 482 PRINTS Ethylene responsive element binding protein signature 278 298 IPR001471 GO:0003700|GO:0006355
Trre14g04073 482 PRINTS Ethylene responsive element binding protein signature 240 251 IPR001471 GO:0003700|GO:0006355
Trre14g04073 482 SUPERFAMILY DNA-binding domain 238 297 IPR016177 GO:0003677
Trre14g04073 482 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 114 329 - -
Trre14g04073 482 CDD AP2 147 205 IPR001471 GO:0003700|GO:0006355
Trre14g04073 482 Pfam AP2 domain 147 195 IPR001471 GO:0003700|GO:0006355
Trre14g04073 482 Pfam AP2 domain 238 288 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04073 Trre-Chr14 49294583 49297017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04073 118 337 AP2-EREBP Transcription Factor Family AT4G36920 72.851 3.59e-96 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre14g04073 AP2 1.1e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04073 K09284 - gmx:100797238 621.698