Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04050 ATGCTTCCTTTCTTCAACCAAACTATGGAACTTGTTCCCAATCCCATCAGAACTCGAAACCATCTCTCTCCGACACTCGGAGAACTCCTCAAACGCGTCGAAGATGCTCAAAACGACAACAAAATTGCCGATCAACCCGACCATATTCTGGACATTTCTTCCTCCTCTTCTTCCACTACCATTCCCCCACCTTTTTTCCTTTCTTTCACCAACTTAACTTATAGCGTTAAGCTCAAAAGTAAGATTTCTTGCTTTTCCTCAAAACAAAATTCTCTTCCAACCGATCTAGAAGCCGAAACAAAACCAAATGGTACAAAGATTCTCCTCAATGACATATCCGGTGAAGCCAGGGACGGCGAGATCATGGCAGTTCTCGGCGCAAGCGGCTCTGGCAAGTCAACTTTAATTGACGCTCTTGCAGATAGAATTTCCAAAGATTCTCTCAAAGGAACAGTGACACTAAATGGCGACGTTTTGGAGTCAAGTCTTCAGAAGGTGATTTCGGCTTACGTTATGCAAGACGATCTTCTCTTCCCAATGCTCACCGTAGAAGAAACTCTCATGTTCTCAGCCGAATTTCGACTCCCCCGCTCCCTCTCAAAATCAAAGAAAAAGGCTCGCGTCCAAGCATTAATTGATCAACTCGGTCTCCGAAATGCCGCCTCAACTGTCATAGGAGACGAAGGTCACCGCGGTGTTTCCGGTGGAGAACGCCGCCGTGTCTCAATCGGAACAGACATAATTCATGATCCAATCATTTTATTCTTAGATGAACCAACCTCCGGATTGGATTCCACCAGTGCTTACATGGTGGTGAAGGTTTTGCAGCGAATTGCTCAGAGCGGTAGCATTGTTATGATGTCCGTTCATCAACCAAGCTACAGAATCCTCGGTTTGTTAGACCGTTTAATCTTCCTCTCTCACGGTCAAACAGTCTACAGCGGTTCTTCGGTGAACCTCCCTAATTTCTTCTCCGAATTCGGCCATCCGATACCGGAAAACGAAAACCGCACAGAATTCGCATTAGATCTGATCCGTGAGCTTGAAGGAACTCCGGGAGGAACAAAAAGTCTCGTCGAGTTCAACAAATCATGGCAATTAAAAAATCAACCACCGTCTGCAACCGTAGTTACTAACGGACCAAAACTGTCGTTAAAAGACGCCATCAGCGCAACCATCTCAAGAGGAAAACTAGTTTCAGGAACTAACGGCGGAAACGGAAACGGAAATTCAACTGCATCGTCAGTTGCCACGTTTGCAAATCCATTTTGGATTGAAATGGCGGTTATTGGAAAACGATCTCTAACAAACTCAAGGCGGATGCCCGAATTATTCGGTATCCGCCTCGGTGCAGTTCTGGTCACCGGAGGTATCTTAGCCACCGTGTTCTATCATCTTGACAATTCACCAAAAGGTGTTCAAGAAAGATTAGGATTCTTCGCATTCGCCATGTCAACAACCTTCTACACTTGTGCTGAAGCAATTCCAGTATTCCTCCAAGAACGTTACATCTTCATGAGAGAAACTGCTTACAATGCTTACCGTCGATCTTCCTATGTCCTCGCTCATTCCATCATCTCCCTCCCTGCACTTATCTTCCTCTCATTCGCCTTCGCCGTCACAACTTTCTGGTCAGTCGGACTAGCCGGCGGATCATCTGGTTTCCTTTTTTACTTTTTAACAATCTTAGCATCCTTCTGGGCAGGTAGTTCCTTCGTGACGTTCCTCTCCGGCGTTGTTTCTCATGTGATGCTTGGTTTTACAGTTGTGGTTGCAATTTTAGCTTACTTTCTTCTCTTCAGTGGATTCTTTATCAGTAGAGATAGGATTCCACCTTACTGGATATGGTTCCATTATTTATCACTAGTGAAGTATCCTTTTGAAGGAGTGCTTCAGAATGAATTTGATATTAAGCCACCAAGGTGTTTTGTAAGAGGGATTCAGATGTTTGATAACACGCCGCTCGGCGATGTTCCGGGGAGTTTGAAGGTTGAGTTGTTGAAGAGTATGAGTAAGACATTGGGAATTGACATAACAAGTTCTACTTGTGTTGTTACTGGAGCTGATATATTGAAGCAGCAAGGGGTTACAGAGCTTAGTAAATGGAACTGCTTGTTCATTACTATTGCTTGGGGTTTCTTCTTTCGTTTCCTGTTTTACTTGGCGTTGCTGTTTGGAAGCAAGAACAAGAGGAAATAA 2199 0.4443 MLPFFNQTMELVPNPIRTRNHLSPTLGELLKRVEDAQNDNKIADQPDHILDISSSSSSTTIPPPFFLSFTNLTYSVKLKSKISCFSSKQNSLPTDLEAETKPNGTKILLNDISGEARDGEIMAVLGASGSGKSTLIDALADRISKDSLKGTVTLNGDVLESSLQKVISAYVMQDDLLFPMLTVEETLMFSAEFRLPRSLSKSKKKARVQALIDQLGLRNAASTVIGDEGHRGVSGGERRRVSIGTDIIHDPIILFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVMMSVHQPSYRILGLLDRLIFLSHGQTVYSGSSVNLPNFFSEFGHPIPENENRTEFALDLIRELEGTPGGTKSLVEFNKSWQLKNQPPSATVVTNGPKLSLKDAISATISRGKLVSGTNGGNGNGNSTASSVATFANPFWIEMAVIGKRSLTNSRRMPELFGIRLGAVLVTGGILATVFYHLDNSPKGVQERLGFFAFAMSTTFYTCAEAIPVFLQERYIFMRETAYNAYRRSSYVLAHSIISLPALIFLSFAFAVTTFWSVGLAGGSSGFLFYFLTILASFWAGSSFVTFLSGVVSHVMLGFTVVVAILAYFLLFSGFFISRDRIPPYWIWFHYLSLVKYPFEGVLQNEFDIKPPRCFVRGIQMFDNTPLGDVPGSLKVELLKSMSKTLGIDITSSTCVVTGADILKQQGVTELSKWNCLFITIAWGFFFRFLFYLALLFGSKNKRK 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04050 732 Pfam ABC-2 type transporter 429 635 IPR013525 GO:0016020|GO:0140359
Trre14g04050 732 Pfam ABC transporter 109 261 IPR003439 GO:0005524
Trre14g04050 732 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 94 333 IPR003439 GO:0005524
Trre14g04050 732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 325 IPR027417 -
Trre14g04050 732 Gene3D - 95 323 IPR027417 -
Trre14g04050 732 SMART AAA_5 118 346 IPR003593 GO:0016887
Trre14g04050 732 FunFam ABC transporter G family member 6 98 324 - -
Trre14g04050 732 Pfam ABC-2 type transporter 290 351 IPR043926 GO:0140359
Trre14g04050 732 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 53 720 - -
Trre14g04050 732 ProSitePatterns ABC transporters family signature. 233 247 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04050 Trre-Chr14 49087968 49090166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04050 108 293 Calmodulin-binding Proteins AT2G36910 29.630 6.51e-11 64.3