Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04025 ATGGCAATGAAGAGACAAAGGAGCAATGAAAACAAAGATTTAGTAAATTGTCTAATGCTACTTTCTTGTCCACAACAAAAAACCATTGAAAATGGTGAATATGAATGCAAAACATGTAACAAAAAATTCTCATCTTTTCAAGCACTTGGTGGCCATAGAGCTAGTCACAAGAGAGTTAAACTATCTGAAGGAGAAGAACTCAAAGAACAAGCAAAATCTCTTAGTTTGTGGAATAAACCCAAAATGCATGAGTGTTCTATTTGTGGTATGGGATTTTCTTTGGGTCAAGCATTAGGAGGACACATGAGAAAACATAGAGCTCTAATCAATGAAGGGGTTTCATCTATCAATGAAATTATGGCAAAAATTCCAATTTTGAAGAGATCAAATAGTAAGAGGGTTATGGGATTGGACTTGAATTTGACACCTCTAGAGAATGATGACTTGATGATGTTTGGAATGAAGTCACCCTTACCCCTAACACCAATTCCTCTTTCTTTGTTCTGA 507 0.355 MAMKRQRSNENKDLVNCLMLLSCPQQKTIENGEYECKTCNKKFSSFQALGGHRASHKRVKLSEGEELKEQAKSLSLWNKPKMHECSICGMGFSLGQALGGHMRKHRALINEGVSSINEIMAKIPILKRSNSKRVMGLDLNLTPLENDDLMMFGMKSPLPLTPIPLSLF 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04025 168 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Trre14g04025 168 Pfam C2H2-type zinc finger 34 58 - -
Trre14g04025 168 Pfam C2H2-type zinc finger 83 107 - -
Trre14g04025 168 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Trre14g04025 168 Gene3D Classic Zinc Finger 31 105 - -
Trre14g04025 168 SMART c2h2final6 34 56 IPR013087 -
Trre14g04025 168 SMART c2h2final6 83 105 IPR013087 -
Trre14g04025 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 105 IPR013087 -
Trre14g04025 168 PANTHER ZINC FINGER PROTEIN ZAT5 7 147 - -
Trre14g04025 168 SUPERFAMILY beta-beta-alpha zinc fingers 34 105 IPR036236 -
Trre14g04025 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04025 Trre-Chr14 48937773 48938279 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04025 3 153 C2H2 Transcription Factor Family AT2G37430 45.238 5.35e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre14g04025 zf-C2H2_6 1.3e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04025 - - aprc:113870747 214.542