Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04024 ATGAAGAGACAAAGAGATATAGAAGGATTAGAAAGCATAGATTTAGCAAATTGTCTAATGATGCTCTCTTATCCCCAACATCAACAAAACAATAAACCAAATCAAAAAAGTTTCGGGCAAGCGGAATATGAGTGCAAAACATGCAACAAAAAATTCTCATCATTTCAAGCACTTGGTGGCCATAGGGCTAGTCATAAAAGATCAAAATTTGAAGGTGATGAACTCATCAAAGCAAATGCATTGACTTTGGGAAATAAACCAAGAATGCATGAATGTTCCATTTGTGGTCAAAAATTTTCTTTGGGACAAGCATTAGGTGGACACATGAGAAGACATAAAGCTATCATCAATGAAGAGGTTGTTTCTTCAATGGAAAAGATTGTGAAATCACCAATTTTAAAGAGATTGAATAGTGCAAGGATTATGTGCTTGGATTTGAACTTGACACCATTAGAGAATGATTTGAAGTTATTGTTTGGAAAGATGGCTCCCAATCTTGATGTTTTAGTCTGA 513 0.347 MKRQRDIEGLESIDLANCLMMLSYPQHQQNNKPNQKSFGQAEYECKTCNKKFSSFQALGGHRASHKRSKFEGDELIKANALTLGNKPRMHECSICGQKFSLGQALGGHMRRHKAIINEEVVSSMEKIVKSPILKRLNSARIMCLDLNLTPLENDLKLLFGKMAPNLDVLV 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04024 170 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Trre14g04024 170 SUPERFAMILY beta-beta-alpha zinc fingers 43 112 IPR036236 -
Trre14g04024 170 Pfam C2H2-type zinc finger 90 114 - -
Trre14g04024 170 Pfam C2H2-type zinc finger 43 67 - -
Trre14g04024 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Trre14g04024 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Trre14g04024 170 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Trre14g04024 170 SMART c2h2final6 90 112 IPR013087 -
Trre14g04024 170 SMART c2h2final6 43 65 IPR013087 -
Trre14g04024 170 PANTHER ZINC FINGER PROTEIN ZAT5 11 154 - -
Trre14g04024 170 Gene3D Classic Zinc Finger 69 135 - -
Trre14g04024 170 Gene3D Classic Zinc Finger 40 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04024 Trre-Chr14 48931068 48931580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04024 1 168 C2H2 Transcription Factor Family AT2G37430 48.864 3.03e-45 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre14g04024 zf-C2H2_6 8.7e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04024 - - gmx:100806997 236.113