Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04014 ATGGCATTTTTCTCTGGATTTCAACGCTTACTTCGTCATTCTCAATCCCCACTTCTTAGCTCTCACTTCACTTCGATACGTCTCAATTCAACTCTCACTTCTCCCAAACTTTTTGTCAGCGGCCTTTCGAGACAGACAACGGATGAAAAACTTACGGAAGCATTTTCTCCTTTTGGGCAGCTGGTCGAAGCTAAGGTGATAATGGACAGAGCTTCTGGAAGATCAAAGGGATTTGCTTTTGTATCGTATGCAACCGTGGAAGAAGCTGAGAAGGCAAGAGAAGGAATGAATGCTAAATTTTTGGATGGATGGGTTATATTTGTTGATCCTGCCAAACCAAGAGAACCCAGACCTCCTCAGCAATCAGAATCTCAGCCGTCTCAAGCTGGTTTCACAGTTAATAAGACTGTTGGGTGGTGTGGTTGA 426 0.439 MAFFSGFQRLLRHSQSPLLSSHFTSIRLNSTLTSPKLFVSGLSRQTTDEKLTEAFSPFGQLVEAKVIMDRASGRSKGFAFVSYATVEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPQQSESQPSQAGFTVNKTVGWCG 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04014 141 Gene3D - 27 135 IPR012677 -
Trre14g04014 141 PANTHER NUCLEOLAR PROTEIN 8 20 140 - -
Trre14g04014 141 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 103 IPR000504 GO:0003723
Trre14g04014 141 FunFam RNA binding protein 22 135 - -
Trre14g04014 141 MobiDBLite consensus disorder prediction 111 130 - -
Trre14g04014 141 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Trre14g04014 141 SMART rrm1_1 36 109 IPR000504 GO:0003723
Trre14g04014 141 SUPERFAMILY RNA-binding domain, RBD 34 133 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04014 Trre-Chr14 48832748 48834919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04014 37 128 Eukaryotic Initiation Factors Gene Family AT3G16380 38.947 5.97e-14 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04014 - - gmx:100306326 219.164