LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre14g04013	ATGACGTCATTTTTGAAGCCTGAGAATGCCCTTAAAAGGGCAGAAGAGTTAATCAATGTCGGCCAGAAGCAGGATGCTCTTCAGACCCTGCATGATCTCATTACTTCGAAAAGGTACAGAGCATGGCAGAAAACACTTGAAAGGATCATGTTTAAGTATGTAGAGCTGTGTGTAGACATGAGGAAAGGACGGTTTGCTAAGGACGGGCTCATTCAATATCGAATCATTTGTCAGCAAGTTAATGTTAGTTCACTGGAGGAGGTGATTAAGCATTTCATGCACCTGTCAACAGAGAAAGCTGAACAAGCACGTAGCCAGGCTCAGGAATTAGAAGAAGCCCTTGATGTTGATGACTTAGAGGCAGATAAAAGGCCCGAGGACTTGATGCTGAGCTATGTCAGTGGTGAGAAAGGAAAGGATAGATCTGATCGGGAGCTTGTTACCCCGTGGTTTAAATTTCTATGGGAAACTTACAGAACAGTGCTCGAAATATTGCGGAACAACTCAAAATTGGAAGCCCTATATGCTATGACAGCCCATCGAGCTTTCCAGTTTTGTAAGCAGTATAAACGAACGACAGAGTTTCGTAGACTTTGCGAAATCATTAGAAACCATTTGGCTAATCTTAACAAATATCGGGACCAACGAGACCGACCTGATCTTTCTGCTCCTGAAAGCTTGCAATTGTACCTTGATACAAGATTTGAGCAGCTGAAAATTGCCACTGAGCTTGAACTCTGGCAGGAAGCATTTAGATCTGTTGAAGATATCCATGGGTTGATGTGCATGGTCAAGAAAACTCCGAAACCATCCTTGATGACGGTTTACTATGTTAAGTTGACTGAAATATTTTGGATATCTTCAAGTCATTTATATCATGCATATTCATGGTTCAAGCTCTTTTTGTTACAAAAAAGTTTCAACAAAAATCTGAGTCAGAAGGATCTTCAGTTAATAGCATCATCTGTTGTTTTAGCTGCACTTTCAGTACCTCCTCATGATCGCACTCACGGTGCATCTCATTTAGAACTAGAGCATGAAAAGGAGCGAAATTTGAGGATGGCTAATCTTATAGGCTTTAATCTTGAAACTAAGTCTGATAGCAGAGAAATGCTCTCAAGGTCATCACTTCTCGCTGAACTGGCATCAAAGGGTGTGATGTCTTGTGTTTCACAAGAAGTGAAAGACATTTACTATCTTTTGGAACATGAACTTCTACCCTCAGATCTTGCACTTAAAGTACTACCCTTGCTAAATAAAATTTCAAAATTAGGGGGTAAATTTACCTTTGCTTCATCGGTTCCAGAGGTGCAGTTTTTGCAGTATGTCCCAGCACTTGAAAAGTTAGCTACCTTGAGGTTACTACAACAGGTGTCTAATGTCTACCAAACAATGAAGATCGACAACCTTGCTGGGTTGATCCCTTTCTTTGATTTTTCTGTTGTGGAAAAGATTTCTGTGGATGCTGTTAAGCAGAAATTTCTATCAATGAAAGTCGACCACATGAAAAATGTTGTTATTTTCTGTAAGACGAGTCTTGAGGCTGATGGCTTGAAGGATCACTTGGCTAGTTTTGCTGAACAATTGAATAAGGCAAGGCAAATGATTTGTCCTCCTGATAGGAAACAATCAAAACTTGGAGCCTTGCTCCCGGCCTTGTCTGAGGTTGTGGCCAAAGAACACAAGAGGCTCCTTGCTCGGAAATCAATTATTGAAAAGAGGAAAGAGGATCAAGAACGACAGCTTCTTGAAATGGAACGTGAGGAGGAGTCCAAGAAGATAAGACTGCAGAAAGTTAATGATGAAGCAGAGCAAAGGCGACTTGCAGCTGAGTTTGAGGCTAGGCGACATAAAAGGATCCAAAGAGAAATGGAGGAAAAGGATAAAGAAGAAGCTCAGCTTATGCTTGAAGAAGCTAAAAAGCTACTTTCAGGAAGGGGTAAAAAGCCCCCGATCATAGAGACAGGCAACCTTTCTAAGCAGGCCTTGTTACAGTTGAATTTGATGCAACAACAACGGTTGAGACAAGATATGGAGAAGAAACTGCAGAAATTAGCTAAAACCATGGATCATTTGGAGAGAGCAAAGAGAGAAGAGGCTGCTCCGCTTATTGAAGCGGCATATCAACAGCGCCTAGTTGAAGAGAGGATTCTTCATGAGCGTGAGCAACAATTGGAGGTTGAACTGAGCAAACAGCGACATGCTGGCGATCTCAATGAAAAGGAGAGGCTTAGTCGAATGATGGGAAATAAAGAGATATATCAAGAGAAAGTTGTCAGTCATCGCCAAGCAGAAATTAGTAGACTTAATAGAGAAAGAGAGGAACGCATCTCTAGGATTTTGCAATCCAGAAAACAGGAGAGGGAAAAGATGAGGAAGTTGAAGTATTTTCTTCAGGTTGAAGAAGAGAGACGACAAAAATTGCGTGAGGCAGAAGAAGCTCAGAAGCGCGAAGAGGCAGAGAGAAAAAAGAAGGAACAGCTTGAACGCCAAGCAAAATTGGATGAGATAGCTGAAAAGCAGAGGCAAAGGGAAAGAGAAATTGAAGAAAAGGCTGAGAGGGAAAAGAGGGAAGCATTGTTGGGCAGACCTGCTGAACCAGCTCTGAGGCCTTATGAGCCTCCTGCCCGTCCATTGGAGTCTGGTGCTGCTCCTGCTGCTGCAGCTGCTGCAACCGCAGCTCCAGGGAAATATGTTCCCAAGTTCCGGCGAGGAGGTGCTGATACCACAAGAGCTCCTCCTCCAGAAGCAGATCGTTGGGGCAACAGTGGCAGCAAGCCAGATGGTGACAGGTGGGACCGCAACTCCTCATTTGGTTCTGGCGGGGGTTCAAGGTCATCTTCAACTTGGTCATCTTCCAGGGTTTCGCGTGATCGTCAGTAA	2883	0.4318	MTSFLKPENALKRAEELINVGQKQDALQTLHDLITSKRYRAWQKTLERIMFKYVELCVDMRKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQELEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKIATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMTVYYVKLTEIFWISSSHLYHAYSWFKLFLLQKSFNKNLSQKDLQLIASSVVLAALSVPPHDRTHGASHLELEHEKERNLRMANLIGFNLETKSDSREMLSRSSLLAELASKGVMSCVSQEVKDIYYLLEHELLPSDLALKVLPLLNKISKLGGKFTFASSVPEVQFLQYVPALEKLATLRLLQQVSNVYQTMKIDNLAGLIPFFDFSVVEKISVDAVKQKFLSMKVDHMKNVVIFCKTSLEADGLKDHLASFAEQLNKARQMICPPDRKQSKLGALLPALSEVVAKEHKRLLARKSIIEKRKEDQERQLLEMEREEESKKIRLQKVNDEAEQRRLAAEFEARRHKRIQREMEEKDKEEAQLMLEEAKKLLSGRGKKPPIIETGNLSKQALLQLNLMQQQRLRQDMEKKLQKLAKTMDHLERAKREEAAPLIEAAYQQRLVEERILHEREQQLEVELSKQRHAGDLNEKERLSRMMGNKEIYQEKVVSHRQAEISRLNREREERISRILQSRKQEREKMRKLKYFLQVEEERRQKLREAEEAQKREEAERKKKEQLERQAKLDEIAEKQRQREREIEEKAEREKREALLGRPAEPALRPYEPPARPLESGAAPAAAAAATAAPGKYVPKFRRGGADTTRAPPPEADRWGNSGSKPDGDRWDRNSSFGSGGGSRSSSTWSSSRVSRDRQ	960

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre14g04013	960	Pfam	PCI domain	373	508	IPR000717	-
	Trre14g04013	960	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT	1	950	IPR027512	GO:0005852
	Trre14g04013	960	Coils	Coil	668	698	-	-
	Trre14g04013	960	MobiDBLite	consensus disorder prediction	807	960	-	-
	Trre14g04013	960	FunFam	Eukaryotic translation initiation factor 3 subunit A	352	494	-	-
	Trre14g04013	960	FunFam	Eukaryotic translation initiation factor 3 subunit A	268	342	-	-
	Trre14g04013	960	Coils	Coil	561	606	-	-
	Trre14g04013	960	Gene3D	UVR domain	217	268	-	-
	Trre14g04013	960	MobiDBLite	consensus disorder prediction	807	863	-	-
	Trre14g04013	960	Hamap	Eukaryotic translation initiation factor 3 subunit A [EIF3A].	1	934	IPR027512	GO:0005852
	Trre14g04013	960	ProSiteProfiles	PCI domain profile.	316	513	IPR000717	-
	Trre14g04013	960	Gene3D	-	352	510	-	-
	Trre14g04013	960	Gene3D	-	269	342	-	-
	Trre14g04013	960	MobiDBLite	consensus disorder prediction	937	954	-	-
	Trre14g04013	960	FunFam	Eukaryotic translation initiation factor 3 subunit A	217	268	-	-
	Trre14g04013	960	SMART	motif in proteasome subunits, Int-6, Nip-1 and TRIP-15	441	532	IPR000717	-
	Trre14g04013	960	Coils	Coil	610	642	-	-
	Trre14g04013	960	Coils	Coil	93	120	-	-
	Trre14g04013	960	Coils	Coil	797	858	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre14g04013	Trre-Chr14	48822855	48829020	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre14g04013	1	954	Eukaryotic Initiation Factors Gene Family	AT4G11420	69.278	0.0	1269

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre14g04013	K03254		-	gmx:100803796	1437.94