Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04005 ATGGCGGCGGCGCGGCGGCTCCGTGAGCTTCAATCAGAACAATCAAACAAGATCTGCGTCGATTGTTCCCAAAAGAATCCACAATGGGCATCCGTTTCCTACGGAATTTTCATGTGTTTAGAATGTTCCGGAAAACACCGTGGCCTCGGCGTTCACATTTCCTTCGTCCGATCTGTTACAATGGATTCATGGTCCGATCTCCAGATCAAGAAAATGGAAGCAGGAGGTAATCGCAATCTCAATTTCTTCCTCGCTCAATACGGAATCCCTAAGGAAACTGATATCGTTGCTAAGTATAATTCAAACGCTGCTTCAATTTATCGCGATCGGATTCAAGCTCTTGCTGAAGGTCGTTCATGGCGGGATCCACCGGTTGTTAAAGAGAATTCGAATTCCAATGCGAATGCGAATACTCGTGCTGGAAAAGGGAAGCCTCCTCTGGCTTCGTCGAATGGAAGTGGTTGGGATGATAATTGGGATAATGATGATAATTATGGATCTCGTGCTGATATTAGGAGGAATCAGAGTACTGGTGATGTTATGGGATTTGTTGGTGGTGGTGGTGGAGTTACTCCGTCGAGGTCTAAATCGACGGAGGATATTTATACGAGGACACAATTGGAAGCTTCTGCTGCTAATAAGGAAGGATTCTTTGCGAGGAAGATGGCGGAGAATGAATCGCGACCGGAGGGGCTTTCGCCTTCTCAGGGTGGGAAGTATGTTGGGTTTGGATCTAGTCCTGGTCCTGCTCAGAGGATATCTCCTCAAAATGATTATTTATCTGTTGTTTCTGAGGGAATTGGTAAATTATCGATGGTTGCTCAATCTGCAACCAAGGAGATTACTGCCAAGGTAAAGGACGGAGGTTATGATCACAAGGTCAATGAAACTGTCAATATTGTCACTCAGAAGACATCCGAGATTGGACAAAGGACATGGGGTATAATGAAAGGGGTCATGGCATTGGCCACACAAAAGGTTGAGGAACTCACCAAAGATTACCCGAATGGGAATTCTGATAACTGGCAACGAAATGAAAATGATAGACATGATTTCAATCAAGATAATAAAAGCTGGAATTCTTCTACTAGAGAAGGACAACCTTCATCAGGTGGACAAAGTAATACTTACCACTCAAACTCTTGGGATGATTGGGACAATCAAGATACAAGGAAGGAAGTACCAGCTAAAGGCTCAGCTCCTCATAAGAATGATGATTGGGCTGGTTGGGATGATGGCAAGGATGATGATGAATATGATAATAAATCTTTTGGTCATAATGGGACGTCAGGTTCTGGCTGGACTGGAGGAGGCTTTCACTAA 1323 0.4437 MAAARRLRELQSEQSNKICVDCSQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDSWSDLQIKKMEAGGNRNLNFFLAQYGIPKETDIVAKYNSNAASIYRDRIQALAEGRSWRDPPVVKENSNSNANANTRAGKGKPPLASSNGSGWDDNWDNDDNYGSRADIRRNQSTGDVMGFVGGGGGVTPSRSKSTEDIYTRTQLEASAANKEGFFARKMAENESRPEGLSPSQGGKYVGFGSSPGPAQRISPQNDYLSVVSEGIGKLSMVAQSATKEITAKVKDGGYDHKVNETVNIVTQKTSEIGQRTWGIMKGVMALATQKVEELTKDYPNGNSDNWQRNENDRHDFNQDNKSWNSSTREGQPSSGGQSNTYHSNSWDDWDNQDTRKEVPAKGSAPHKNDDWAGWDDGKDDDEYDNKSFGHNGTSGSGWTGGGFH 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04005 440 MobiDBLite consensus disorder prediction 356 383 - -
Trre14g04005 440 MobiDBLite consensus disorder prediction 332 440 - -
Trre14g04005 440 MobiDBLite consensus disorder prediction 224 254 - -
Trre14g04005 440 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Trre14g04005 440 MobiDBLite consensus disorder prediction 384 423 - -
Trre14g04005 440 FunFam ADP-ribosylation factor GTPase-activating protein 1 129 - -
Trre14g04005 440 Pfam Putative GTPase activating protein for Arf 5 99 IPR001164 GO:0005096
Trre14g04005 440 MobiDBLite consensus disorder prediction 125 139 - -
Trre14g04005 440 MobiDBLite consensus disorder prediction 118 199 - -
Trre14g04005 440 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Trre14g04005 440 CDD ArfGap_ArfGap1 3 117 - -
Trre14g04005 440 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Trre14g04005 440 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Trre14g04005 440 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Trre14g04005 440 SUPERFAMILY ArfGap/RecO-like zinc finger 5 114 IPR037278 -
Trre14g04005 440 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 440 IPR044519 GO:0005096|GO:0016192
Trre14g04005 440 Gene3D Arf GTPase activating protein 1 137 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04005 Trre-Chr14 48738829 48742117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04005 5 81 C2H2 Transcription Factor Family AT4G21160 50.000 3.56e-21 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04005 K12492 - gmx:100778302 579.711