Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04004 ATGATGGTGATGAACACGAGTGCCATTGAAACATCATCGGATGGAGCCTGGCAGGGAGACAATCCATTGAACCATGGTCTTCCATTGTTGATCATTCAAACAACTCTAGTCATGTTTGTTAGCCGCACCCTCGCCTTCTTCCTCAAACCCCTTCGTCAACCTAGAGTTGTTGCTGAGATTATTGGTGGAATTTTGCTAGGACCTTCCGGTATTGGACGCAACAAAACTTTTATGCATACAGTTTTCCCTTCATGGAGCACTCCCATACTTGAATCAGTAGCCAGCATTGGCCTTCTCTTCTATCTCTTCCTTGTTGGTCTCGAGCTCGACCTCCGCACCATCAACCGCACCGGCAAGCGAGCTTTTAAGATCGCTGTCGCCGGAATATCCCTCCCATTCCTCTTTGCCATTGGAGTAACCTTCCTTCTCCAAAAAGCCATCCATTTGAACTCCGAAACTCACAAAGTTAGTTACATTCAGCTCTTCATATTCTTAGGTGTATCTCTCTCCATCACTGCTTTCCCAGTACTCGCTCGTATCTTGGCAGAGCTCAAATTGTTAACAACACATGTAGGAGAAACCGCCATGGCCGCGGCAGCTTTTAATGACGTTGCGGCTTGGGTTTTATTGGCACTAGCCGTTGCTTTAGCCGGCGGGGGAGGACAAAAAAACAGTGTCTTGACATCCATCTTAGTACTACTCTCTGGCATAGCTTTTGTCCTGTTTATGTTGTTTGTGATTCGACCAATTATGGAGCGTGTTTCGCTCCGTTGCTCACGACAACACGGAGCGTTGGATGAAATGTTCATATGCATGACACTTGCAGGTGTTATGATATCGGGATTTATGACGGATTTGATAGGGATACATTCGATTTTCGGGGCTTTCGTTTTTGGGTTAACGATTCCAAGAGGGGGAGAATTTGCAAGTAAACTTACTAAAAGGATAGAAGATTTTGTATCAAATTTGATGCTACCTTTGTATTTTGCATCTAGTGGGTTGAAAACGGATGTTGGTAAGTTACAAGGTGTGGTTGAATGGGGAATTCTTTTACTTGTTATATTGACCGCTTGTGTTGGGAAAATTTTGGGCACTTTTGTTGTGGCAGTTATGAGTACTATGCCAGTTAGGGAATCTTTGACACTTGGTGTTTTGATGAATACTAAAGGGTTGGTTGAGATTATCGTTCTCAATATTGGCAAAGAAAAGAAGGTACTTAACGACGAGATGTTTACCATCTTGGTTCTCATGGCTATCTTCACCACCTTCATTACAACTCCGATAGTCGTAGCCATATACAAACCATCTCGTCAACGCCGAGTTGGAAACCCTCCACCCCTGACAGACACACAAGAGAAGCTTCGCATTCTCGCTTGCATCCATGGAACCGGCAACATTCCGTCACTAATCAACTTCGTTGAATCAGTTCGAGCCACCGACAAGTCTAGTAAGATCAAACTTTATGTGATGCAACTTACTGAACTCACTGATAGCTCATCATCCATCTTGATGGTTCAACGCAGTAGAAAGAGCGGGTTTCCATTCATCAATCGATTCCAAAGAGGAACCATGCACGATGCATTCCATGCTTTTGGTCAAGTCGGTCAAGTTACAGTGCATCATTTGACATCAATCTCATCACTGTCTACAATCCACGAAGACATATGTCATATTGCAGAAGAGAAGGGTGTGGCAATGATCATATTGCCTTTTCACAAAAGGTGGAGAGGAGAAGATGAAGATGCAATAGAAAACATAGGACAAGGATGGAAGGACGTTAACCAAAGGGTGCTTCAGAGTGCACCATGCTCTGTTGCAGTGCTTGTTAATCGTGGCGTTAGCAAAAGGTTTGAACAAACGGTCGAAACCAGTGCTACTTCAGGGAAAAAAGTGTGCATAATTTTCATTGGAGGACCCGATGATCGAAAGGTTTTAGAGTTGGGAAGTAGAATGGCAGAACATCCAGCAATTAGGTTGTCTGTTGTGAGATTCAGATCACACAAAGAAGGTACTTTCAGGGATCAAGAACAAAGCCACAACACATCAACATCTGCTAACAATTGGGAAAATGATCAAAAGGAGTTGGATGAGGTAGCAGTAAATGAATTCAAAACTAAATGCTTTGGAGCAGTGGAGTATATTGAAAATGACACTGCAAACATAGCAGATGAAGTTTTAGCAATTGGGAGGGTTAAAGAGTATGAACTTGTAATTGTGGGGAAGGGACATCAGCTTCTTGATTCAACCATGATGATTGACATAAAGGATTCTTGTCTAGAGCATGCTGAGTTTGGACCTATTGGAGATCTGTTAACTTCTTCAGGCCAAGGCATTACGAGTTCAGTGCTCGTTATACAAGACCAACACCAAGACCAACATTTTACAGATTCAAGTGAGACTATTACTAGAAAAACATCAAGGGCAAAGAGTATTGTGATCAATACCATCTCAGAATCATCCGTATAG 2466 0.4286 MMVMNTSAIETSSDGAWQGDNPLNHGLPLLIIQTTLVMFVSRTLAFFLKPLRQPRVVAEIIGGILLGPSGIGRNKTFMHTVFPSWSTPILESVASIGLLFYLFLVGLELDLRTINRTGKRAFKIAVAGISLPFLFAIGVTFLLQKAIHLNSETHKVSYIQLFIFLGVSLSITAFPVLARILAELKLLTTHVGETAMAAAAFNDVAAWVLLALAVALAGGGGQKNSVLTSILVLLSGIAFVLFMLFVIRPIMERVSLRCSRQHGALDEMFICMTLAGVMISGFMTDLIGIHSIFGAFVFGLTIPRGGEFASKLTKRIEDFVSNLMLPLYFASSGLKTDVGKLQGVVEWGILLLVILTACVGKILGTFVVAVMSTMPVRESLTLGVLMNTKGLVEIIVLNIGKEKKVLNDEMFTILVLMAIFTTFITTPIVVAIYKPSRQRRVGNPPPLTDTQEKLRILACIHGTGNIPSLINFVESVRATDKSSKIKLYVMQLTELTDSSSSILMVQRSRKSGFPFINRFQRGTMHDAFHAFGQVGQVTVHHLTSISSLSTIHEDICHIAEEKGVAMIILPFHKRWRGEDEDAIENIGQGWKDVNQRVLQSAPCSVAVLVNRGVSKRFEQTVETSATSGKKVCIIFIGGPDDRKVLELGSRMAEHPAIRLSVVRFRSHKEGTFRDQEQSHNTSTSANNWENDQKELDEVAVNEFKTKCFGAVEYIENDTANIADEVLAIGRVKEYELVIVGKGHQLLDSTMMIDIKDSCLEHAEFGPIGDLLTSSGQGITSSVLVIQDQHQDQHFTDSSETITRKTSRAKSIVINTISESSV 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04004 821 FunFam Cation/H(+) antiporter 15 29 440 - -
Trre14g04004 821 Pfam Sodium/hydrogen exchanger family 36 429 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Trre14g04004 821 Gene3D - 487 764 - -
Trre14g04004 821 SUPERFAMILY ABC transporter involved in vitamin B12 uptake, BtuC 33 145 IPR037294 -
Trre14g04004 821 PANTHER CATION/H + ANTIPORTER 8 789 - -
Trre14g04004 821 MobiDBLite consensus disorder prediction 670 690 - -
Trre14g04004 821 Gene3D - 29 442 IPR038770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04004 Trre-Chr14 48732507 48736462 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04004 77 796 Antiporter Super Family AT3G53720 56.631 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04004 K26731 - gmx:100799165 1061.6