Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03991 ATGGATCAACAACTCTTACCTCGCCCTAAGAAACCCTTCATTGCGGACGATGAGATTATGGAGCTGTTATGGCAAAACGGTCAAGTTGTAACGCAGAGTCAAAATAACCGTCATGTGAAGAAACAACCGCCGGGGAGAAACTCTGACGATTCAACTCGCGGCGGAACTTCATCTGAAGTAGAAAATAATAATCAATATATTTTCATGCAAGACGGTGAAATGGCTTCGTGGCTTCATTATCCAATCAACAATGATAATAATGATGATGATGATTCTCCGTTCTCCGGCGATTTCCTTAACAACAGTAACATGCAAAATCCTAATCGAAATTCTCAATTGACTGAATTCCGGCGGAATCCGATGTTAGCTCCATCTCGTCCTCCGAATCTGCCGCAACGGAGATCCGAGCAAGTGCAGCCGAATTTCGCGTATTTTGCTAGGCATGGCGTTAGAGCAGAGCCAGGACCGTCGTCGATTTTGAGAAATTCTGCGAGGGAATCGACGGTGGTTGATTCGTGTGATACGCCAGCTACGATGCCGGCAGCGGGTTCGGAGACTGTAAGAAGCTTAGCGGATCCAACGGAAGGAGAAACCGGAGTGTCGGCGCCTTCGACGATGTTTGATGAACCGGGCGGTTCGAGTAGCAGTGGCGAACCGGTTCAGATGGTAGGGGAGCAGGATCGTAAGAGGAAGGGAAGAGAAGCAGAGGAATGGGAATATCAGAGCGAGGACGTTGATTTTGAATCTGCGGAAGCCAAGAAAAATGTCAGTGGATCATCTACAAAGAGATCTCGTGCGGCTGAGGTCCATAATCTCTCAGAGAGGAGGCGCCGTGATCGGATTAATGAAAAGATGAAAGCTCTTCAAGAACTTATACCTCGATCTAATAAATCTGACAAAGCTTCTATGTTGGATGAAGCAATTGAATACTTGAAGTCACTGCAGTTACAAGTACAGATGATGTCCATGGGATGCGGCATGGTACCTATGATGTTTCCTGGAATCCAGCAGTATATGCCAACAATTGGAATGGGGATGGGAATGGGAATAAACAGACCAGTAATGCCATTTCCAAATATGTTATCTGGTTCTGCTTTGCCTGCAGCTGCAAATTTGGGACCAAGGTTCGCGGCCATGCCCTCTTTTCACATGCCGCATGTTCCTACGCCTGATTCATCCAGAATGCTAGCAACAAATCAGGAAGATAATAATATATTCAGCTCAGTTGGAACACATGATTCAAATCAGTCACGTATACCAAACTTCACTGATCCTTATCAACAATACCTCGGACCCCACCAGATGCAGTTTCAATCAATGCAGAATCGGGCAATGAACCAACCAAATAAATCCGCCAGTCAGGAGATAAATGATTATTTGATAGTTACAATCAAGGGCTGTGCTTATTATTGTATAGCTGTTACCACAAGCTCTCAAACTGGTACTATAGTATTATTGTTATATTTTCTGCCATCTATACTAGAGTATGCCAAGTTTTGTAGTGTAACAGAACGAACTTTTTCGCAGTTCTCAGTTGCAAGCTAA 1545 0.446 MDQQLLPRPKKPFIADDEIMELLWQNGQVVTQSQNNRHVKKQPPGRNSDDSTRGGTSSEVENNNQYIFMQDGEMASWLHYPINNDNNDDDDSPFSGDFLNNSNMQNPNRNSQLTEFRRNPMLAPSRPPNLPQRRSEQVQPNFAYFARHGVRAEPGPSSILRNSARESTVVDSCDTPATMPAAGSETVRSLADPTEGETGVSAPSTMFDEPGGSSSSGEPVQMVGEQDRKRKGREAEEWEYQSEDVDFESAEAKKNVSGSSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRSNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPTIGMGMGMGINRPVMPFPNMLSGSALPAAANLGPRFAAMPSFHMPHVPTPDSSRMLATNQEDNNIFSSVGTHDSNQSRIPNFTDPYQQYLGPHQMQFQSMQNRAMNQPNKSASQEINDYLIVTIKGCAYYCIAVTTSSQTGTIVLLLYFLPSILEYAKFCSVTERTFSQFSVAS 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03991 514 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 263 331 IPR036638 GO:0046983
Trre14g03991 514 MobiDBLite consensus disorder prediction 223 238 - -
Trre14g03991 514 Coils Coil 271 291 - -
Trre14g03991 514 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 265 314 IPR011598 GO:0046983
Trre14g03991 514 CDD bHLH_AtPIF_like 265 328 IPR047265 -
Trre14g03991 514 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 20 449 IPR031066 -
Trre14g03991 514 Pfam Helix-loop-helix DNA-binding domain 269 315 IPR011598 GO:0046983
Trre14g03991 514 Gene3D - 260 323 IPR036638 GO:0046983
Trre14g03991 514 MobiDBLite consensus disorder prediction 31 62 - -
Trre14g03991 514 MobiDBLite consensus disorder prediction 160 174 - -
Trre14g03991 514 SMART finulus 271 320 IPR011598 GO:0046983
Trre14g03991 514 MobiDBLite consensus disorder prediction 153 278 - -
Trre14g03991 514 MobiDBLite consensus disorder prediction 81 111 - -
Trre14g03991 514 FunFam Basic helix-loop-helix transcription factor 260 323 - -
Trre14g03991 514 MobiDBLite consensus disorder prediction 48 62 - -
Trre14g03991 514 MobiDBLite consensus disorder prediction 207 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03991 Trre-Chr14 48551525 48560306 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03991 5 431 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G28800 35.011 4.20e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre14g03991 HLH 3.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03991 - - tpra:123888958 757.673