Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03990 ATGGATCAACAACTCTTACCTCGCCCTAAGAAACCCTTCATTGCGGACGATGAGATTATGGAGCTGTTATGGCAAAACGGTCAAGTTGTAACGCAGAGTCAAAATAACCGTCATGTGAAGAAACAACCGCCGGGGAGAAACTCTGACGATTCAACTCGCGGCGGAACTTCATCTGAAGTAGAAAATAATAATCAATATATTTTCATGCAAGACGGTGAAATGGCTTCGTGGCTTCATTATCCAATCAACAATGATAATAATGATGATGATGATTCTCCGTTCTCCGGCGATTTCCTTAACAACAGTAACATGCAAAATCCTAATCGAAATTCTCAATTGACTGAATTCCGGCGGAATCCGATGTTAGCTCCATCTCGTCCTCCGAATCTGCCGCAACGGAGATCCGAGCAAGTGCAGCCGAATTTCGCGTATTTTGCTAGGCATGGCGTTAGAGCAGAGCCAGGACCGTCGTCGATTTTGAGAAATTCTGCGAGGGAATCGACGGTGGTTGATTCGTGTGATACGCCAGCTACGATGCCGGCAGCGGGTTCGGAGACTGTAAGAAGCTTAGCGGATCCAACGGAAGGAGAAACCGGAGTGTCGGCGCCTTCGACGATGTTTGATGAACCGGGCGGTTCGAGTAGCAGTGGCGAACCGGTTCAGATGGTAGGGGAGCAGGATCGTAAGAGGAAGGGAAGAGAAGCAGAGGAATGGGAATATCAGAGCGAGGACGTTGATTTTGAATCTGCGGAAGCCAAGAAAAATGTCAGTGGATCATCTACAAAGAGATCTCGTGCGGCTGAGGTCCATAATCTCTCAGAGAGGAGGCGCCGTGATCGGATTAATGAAAAGATGAAAGCTCTTCAAGAACTTATACCTCGATCTAATAAATCTGACAAAGCTTCTATGTTGGATGAAGCAATTGAATACTTGAAGTCACTGCAGTTACAAGTACAGAGAGTACAACTTATGCAGATGATGTCCATGGGATGCGGCATGGTACCTATGATGTTTCCTGGAATCCAGCAGTATATGCCAACAATTGGAATGGGGATGGGAATGGGAATAAACAGACCAGTAATGCCATTTCCAAATATGTTATCTGGTTCTGCTTTGCCTGCAGCTGCAAATTTGGGACCAAGGTTCGCGGCCATGCCCTCTTTTCACATGCCGCATGTTCCTACGCCTGATTCATCCAGAATGCTAGCAACAAATCAGGAAGATAATAATATATTCAGCTCAGTTGGAACACATGATTCAAATCAGTCACGTATACCAAACTTCACTGATCCTTATCAACAATACCTCGGACCCCACCAGATGCAGTTTCAATCAATGCAGAATCGGGCAATGAACCAACCAAATAAATCCGCCAGTCAGGAGATAAATGATTATTTGATAGTTACAATCAAGGGCTGTGCTTATTATTGTATAGCTGTTACCACAAGCTCTCAAACTGGTACTATAGTATTATTGTTATATTTTCTGCCATCTATACTAGAGTATGCCAAGTTTTGTAGTGTAACAGAACGAACTTTTTCGCAGTTCTCAGTTGCAAGCTAA 1563 0.4453 MDQQLLPRPKKPFIADDEIMELLWQNGQVVTQSQNNRHVKKQPPGRNSDDSTRGGTSSEVENNNQYIFMQDGEMASWLHYPINNDNNDDDDSPFSGDFLNNSNMQNPNRNSQLTEFRRNPMLAPSRPPNLPQRRSEQVQPNFAYFARHGVRAEPGPSSILRNSARESTVVDSCDTPATMPAAGSETVRSLADPTEGETGVSAPSTMFDEPGGSSSSGEPVQMVGEQDRKRKGREAEEWEYQSEDVDFESAEAKKNVSGSSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRSNKSDKASMLDEAIEYLKSLQLQVQRVQLMQMMSMGCGMVPMMFPGIQQYMPTIGMGMGMGINRPVMPFPNMLSGSALPAAANLGPRFAAMPSFHMPHVPTPDSSRMLATNQEDNNIFSSVGTHDSNQSRIPNFTDPYQQYLGPHQMQFQSMQNRAMNQPNKSASQEINDYLIVTIKGCAYYCIAVTTSSQTGTIVLLLYFLPSILEYAKFCSVTERTFSQFSVAS 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03990 520 MobiDBLite consensus disorder prediction 223 238 - -
Trre14g03990 520 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 263 323 IPR036638 GO:0046983
Trre14g03990 520 Coils Coil 271 291 - -
Trre14g03990 520 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 20 455 IPR031066 -
Trre14g03990 520 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 265 314 IPR011598 GO:0046983
Trre14g03990 520 MobiDBLite consensus disorder prediction 31 62 - -
Trre14g03990 520 SMART finulus 271 320 IPR011598 GO:0046983
Trre14g03990 520 Pfam Helix-loop-helix DNA-binding domain 269 315 IPR011598 GO:0046983
Trre14g03990 520 MobiDBLite consensus disorder prediction 160 174 - -
Trre14g03990 520 MobiDBLite consensus disorder prediction 153 278 - -
Trre14g03990 520 MobiDBLite consensus disorder prediction 81 111 - -
Trre14g03990 520 FunFam Basic helix-loop-helix transcription factor 260 326 - -
Trre14g03990 520 Gene3D - 260 326 IPR036638 GO:0046983
Trre14g03990 520 CDD bHLH_AtPIF_like 265 334 IPR047265 -
Trre14g03990 520 MobiDBLite consensus disorder prediction 48 62 - -
Trre14g03990 520 MobiDBLite consensus disorder prediction 207 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03990 Trre-Chr14 48551525 48560306 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03990 5 437 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G28800 34.341 1.78e-52 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre14g03990 HLH 3.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03990 - - tpra:123888958 743.421