Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03989 ATGGCATCACCTCAAAACTTTGCATCCGAGTTAACAGCCCTTGTTGTAGATGACAAAAAGTCCTACCAAAAGATTCATCAAATGATGTTGAATAATTTTGGAGTGAAAAGTCATGTTGTGGAAAATGGAAAAGAAGCAGTGGACATTCATTTGCATGGCAAAAAATTTGACCTAATTCTCATGGACATGGATATGCCTATCATGAATGGCATTGAGGCAACAAAGGAACTTCGTGCAATGGGAGTTTGTAGCACTATTGTTGGTGTGACGTCACGCTCTACCGAAGCAGAAATGTTAAAATTTATGGAAGCTGGACTTGATGACTATCAAGAGAAACCCTTGACCAAACCAAAGCTTAGTTCCATTCTTGGTAAGATCATCAACCACAACTAG 393 0.3919 MASPQNFASELTALVVDDKKSYQKIHQMMLNNFGVKSHVVENGKEAVDIHLHGKKFDLILMDMDMPIMNGIEATKELRAMGVCSTIVGVTSRSTEAEMLKFMEAGLDDYQEKPLTKPKLSSILGKIINHN 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03989 130 Pfam Response regulator receiver domain 14 121 IPR001789 GO:0000160
Trre14g03989 130 Gene3D - 1 129 - -
Trre14g03989 130 SMART REC_2 11 123 IPR001789 GO:0000160
Trre14g03989 130 CDD REC_hyHK_CKI1_RcsC-like 14 123 - -
Trre14g03989 130 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 129 - -
Trre14g03989 130 SUPERFAMILY CheY-like 10 128 IPR011006 -
Trre14g03989 130 ProSiteProfiles Response regulatory domain profile. 12 127 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03989 Trre-Chr14 48504485 48508050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03989 11 128 Response Regulator Gene Family AT3G04280 44.167 1.11e-26 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre14g03989 Response_reg 3.2e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03989 - - gmx:100794931 164.466