Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03973 ATGGCAGCAGCTCAAGATCATGCAGTGTCAGTGACCCCAAGAAAAAGAGTACTTGTTGTGGATGATGATGATCGTGTCCGAAAGATTCACCAAGATCAATTAAAATCACTTGGTGTCGAATCTTGTTTTGCAAGAAATGGGAAAGAAGCCATCGACATAATTTCTTCGGATTGGTCAGCTCCAACCTTTGATCTAATTCTCATGGCTAGGCATATGCCGCATATGCCACTCATGGATGGCATTCTGACGACTATGGTATTGCGCACGATAGGGTACCCTAGTTTGATTTATGGCATGTCGCATCGCCTTACAGAAGCAGAATGGGAAGAATTTTTTAGTGCAATGCCAGATGCTATCTATGATGAAGGGAAACCTTTGTCCATTGATACAATGAAATATATTGTTGAATCAATTCCTACTCCTAAACTTTGTTATACATGGAGGGAAAGAGTGTCAAGGTTACCTAAACAAGACAAAGGATATTGGTACAATTGTTTTTTTGACCAATAA 510 0.4 MAAAQDHAVSVTPRKRVLVVDDDDRVRKIHQDQLKSLGVESCFARNGKEAIDIISSDWSAPTFDLILMARHMPHMPLMDGILTTMVLRTIGYPSLIYGMSHRLTEAEWEEFFSAMPDAIYDEGKPLSIDTMKYIVESIPTPKLCYTWRERVSRLPKQDKGYWYNCFFDQ 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03973 169 Gene3D - 3 142 - -
Trre14g03973 169 SMART REC_2 15 135 IPR001789 GO:0000160
Trre14g03973 169 SUPERFAMILY CheY-like 13 138 IPR011006 -
Trre14g03973 169 ProSiteProfiles Response regulatory domain profile. 16 139 IPR001789 GO:0000160
Trre14g03973 169 Pfam Response regulator receiver domain 17 104 IPR001789 GO:0000160
Trre14g03973 169 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03973 Trre-Chr14 48214170 48214783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03973 17 112 Response Regulator Gene Family AT3G04280 39.583 1.01e-12 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre14g03973 Response_reg 1.1e-09 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03973 - - tpra:123893190 282.722