Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03967 ATGGCAGCAGCTCAAGATCATGCAGTGACCCCAAAAAAAAGAGTACTTGTTGTGGATGATGATGATCGTGTCCGAAAGATTCACCAAGATCAATTAAAATCATTTGGTGTCGAATCTTGTTTTGCAAGAAATGGGAAAGAAGCCATCGACATAATTTCTTCGGATTGGTCAGCTCCAACCTTTGATCTAATTCTCATGGCTAGGCATATGCCACTCATGGATGGCATTCTGACGACTATGAAGCAGAATGGGAAGAATTTTTTAGTGCAAGGCCAGATTATCTATGATGAAGGGAAACCTTTATCCATTGATACAATGAAATATATTGTTGAATCAATTCCTACTCCTAAACTTTGTTATACATGGAGGGAAAGAGTGTCAAGGTTACCTAAACAAGACAAAGGATATTGGTACAGTTGTTGTTTTGACCAATAA 435 0.3816 MAAAQDHAVTPKKRVLVVDDDDRVRKIHQDQLKSFGVESCFARNGKEAIDIISSDWSAPTFDLILMARHMPLMDGILTTMKQNGKNFLVQGQIIYDEGKPLSIDTMKYIVESIPTPKLCYTWRERVSRLPKQDKGYWYSCCFDQ 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03967 144 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 78 - -
Trre14g03967 144 ProSiteProfiles Response regulatory domain profile. 14 144 IPR001789 GO:0000160
Trre14g03967 144 Pfam Response regulator receiver domain 15 81 IPR001789 GO:0000160
Trre14g03967 144 Gene3D - 1 87 - -
Trre14g03967 144 SUPERFAMILY CheY-like 11 84 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03967 Trre-Chr14 48158367 48158965 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03967 15 81 Response Regulator Gene Family AT3G04280 47.761 2.75e-11 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre14g03967 Response_reg 1.4e-09 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03967 - - tpra:123893190 221.476