Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03962 ATGGCAACAACTCAAGGTCAAGTCATTACATGCAAAGCTGCGGTGGCCTGGGAACCCAACAAACCCTTAACAATCGAAGATGTCGAAGTCGCTCCTCCTCAAGCCAACGAAGTCCGTATCCAAATCCTCTTCACCGCTCTCTGCCACACCGATGCTTATACCTGGAGCGGCAAAGATCCTGAAGGCCTTTTCCCTTGCATTCTCGGTCACGAAGCTGCAGGGATTGTTGAGAGTGTTGGTGAAGGTGTGACTGATGTTAAGCCTGGGGATCATGTGATTCCATGTTACCAAGCTGAGTGTGGAGAATGTAAGTTTTGTAAATCCGGAAAGACGAATTTGTGTGGCAAGGTTCGTGCTGCTACTGGTGTTGGAGTTATGATGGCAGATCGTAAGCCACGGTTTTCTATTAAAGGAAAACCTATTTATCATTTTATGGGAACTTCTACTTTTAGTCAGTATACTGTTGTTCATGATGTTAGTGTTGCTAAGATTCATCCAGATGCTCCTTTGGAAAAAGTTTGTCTTCTTGGTTGTGGTGTTCCAACTGGTCTTGGAGCTGTCTGGAACACTGCTAAAGTTGAGCCAGGGTCAATTGTTGCTATCTTCGGCCTTGGAACTGTTGGGCTTGCTGTTGCGGAGGGTGCAAAATCTGCCGGCGCATCACGGGTTATTGGCATAGATATTGATAGCAGCAAATATGATATAGCGAAAAACTTTGGAGTCACTGAGTTCATTAATCCAAAAGACCACGAGAAACCAATTCAGCAGGTCATAAGTGATCTAACAGATGGAGGAGTTGATTATAGCTTTGAGTGCATTGGAAATGTTTCCGTGATGAGATCTGCTTTGGAATGCTGCCACAAGGGATGGGGAACATCAGTTGTTGTAGGTGTTGCAGCATCAGGGCAGGAAATATCAACTCGCCCTTTCCAGTTGGTGACCGGGCGTGTATGGAAAGGAACAGCTTTTGGTGGCTTTAAGAGCAGGTCACAGGTGCCTTGGCTTGTTGAGAAGTACTTGAAGAAGGAAATCAAGGTTGATGAGTACATTACCCATAATTTGACTCTTGCGGAAATCAACGAGGCTTTTGATCTTATGCATGAAGGGAAATGCCTCCGTTGTGTGCTTGCATTGCATGTATGA 1143 0.4532 MATTQGQVITCKAAVAWEPNKPLTIEDVEVAPPQANEVRIQILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTDVKPGDHVIPCYQAECGECKFCKSGKTNLCGKVRAATGVGVMMADRKPRFSIKGKPIYHFMGTSTFSQYTVVHDVSVAKIHPDAPLEKVCLLGCGVPTGLGAVWNTAKVEPGSIVAIFGLGTVGLAVAEGAKSAGASRVIGIDIDSSKYDIAKNFGVTEFINPKDHEKPIQQVISDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVVVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYLKKEIKVDEYITHNLTLAEINEAFDLMHEGKCLRCVLALHV 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03962 380 SUPERFAMILY GroES-like 327 376 IPR011032 -
Trre14g03962 380 Gene3D - 14 373 - -
Trre14g03962 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 342 IPR036291 -
Trre14g03962 380 Gene3D - 183 321 - -
Trre14g03962 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Trre14g03962 380 CDD alcohol_DH_class_III 9 376 IPR014183 GO:0006069|GO:0008270|GO:0051903
Trre14g03962 380 SUPERFAMILY GroES-like 4 198 IPR011032 -
Trre14g03962 380 PANTHER ALCOHOL DEHYDROGENASE 6 376 - -
Trre14g03962 380 FunFam S-(hydroxymethyl)glutathione dehydrogenase 14 201 - -
Trre14g03962 380 Pfam Zinc-binding dehydrogenase 207 329 IPR013149 -
Trre14g03962 380 NCBIfam S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 11 377 IPR014183 GO:0006069|GO:0008270|GO:0051903
Trre14g03962 380 FunFam S-(hydroxymethyl)glutathione dehydrogenase 183 321 - -
Trre14g03962 380 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03962 Trre-Chr14 48130665 48133296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03962 1 332 Monolignol Biosynthesis Gene Families AT1G72680 26.113 4.05e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03962 K00121 - bvg:104899321 719.924