Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03959 ATGACCTCTTTCACTTGTTCCGCCTCCGACCTTCATGCACTCCTCGGCAGCGGTACAAACTCCACTGCCGCTGCTGACTACATCTGCAACGGCTTTAACGCCGTTGCAAATAAATTCATTGACACAACCTATGCTGTTGACAACACTTACCTTCTTTTCTCCGCTTACCTTGTTTTCGCAATGCAACTCGGTTTTGCAATGCTTTGTGCCGGTTCCGTTCGTGCCAAAAACACCATGAATATTATGTTAACAAACGTCCTTGATGCCGCGACCGGCGGCATCTTTTTCTATATTTTCGGGTTTGCTTTCGCTTTCGGCACACCTTCAAACGGTTTCATCGGAAAACATTTTTTTGGTCTTAGTGAATTTCCTTCTCAGTCCTTTGATTATGGATATTTTCTGTATCAATGGGCATTCGCAATCGCTGCAGCAGGAATCACGAGCGGATCAATTGCGGAACGAACACAGTTCGTTTCGTATTTGATCTACTCGTCGTTTTTAACTGGTTTAGTTTATCCAATTGTTGCTCATTGGTTTTGGTCTGCTGATGGTTGGGGCAGTCCTGCTAGATCAGATAATCTTTTGTTCGGTTCCGGCGTTATCGATTTCGCTGGTTGTGGCGTCGTTCATTTGGTTGGTGCTGTTGCTGGTTTTTGGGGTGCTTTTATTGAAGGACCAAGAATTGGTAGATTTGATCATGAAGGTAAATCTGTTTCAATGAGAGGACATAGTGGTACCTTAGTTGTGATGGGAACATTTTTACTTTGGTTCGGTTGGTACGGTTTTAACCCCGGTTCTTTCCTCAACATTTTGAAAACTTACGGTGAAAGTGGTAATTACTACGGTCAATGGAGCGCGATAGGGAGGACGGCCGTGACAACTACATTAGCAGGTTGCACGGCCGCCCTCACAACATTATTTGGCAAACGTATGCAAACCGGTCATTGGAATGTGACCGATGTTTGTAACGGTCTACTAGGCGGTTTTGCCGCTATAACTGCAGGGTGTTCCGTTGTGGATCCGTGGGCTGCAATTATTTGCGGATTTATCGCTGCTTGGGTTTTAATCGGATGCAATATGTTAGCTGATAAATTTCACTATGATGATCCTCTTGAAGCTGCACAACTTCATGGTGGTTGTGGAACTTGGGGGATAATTTTCACTGCTTTATTTGCTAAGAAACAATATGTGAATGAGGTTTATGGTGGTTCAATTAATAGACCTTATGGATTATTTTTAGGAGGTGGTGCAAGATTATTGGCTGCACATTTGGTTCAAATTGTGGCTATTATTGCTTGGGTGAGTGTTACTATGGGAACAATGTTTTATGTTCTTCATAAGTTGAATTTGCTTAGGACTTCAGCTGAGGAAGAAATGGCTGGTTTGGATTTAACTAGTCATGGTGGAATGGCTTATGAGTATCATGATGAAGGTCAAGAACATTCCAAGAAACGTGCAATTGAAGTATGA 1470 0.4293 MTSFTCSASDLHALLGSGTNSTAAADYICNGFNAVANKFIDTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFFYIFGFAFAFGTPSNGFIGKHFFGLSEFPSQSFDYGYFLYQWAFAIAAAGITSGSIAERTQFVSYLIYSSFLTGLVYPIVAHWFWSADGWGSPARSDNLLFGSGVIDFAGCGVVHLVGAVAGFWGAFIEGPRIGRFDHEGKSVSMRGHSGTLVVMGTFLLWFGWYGFNPGSFLNILKTYGESGNYYGQWSAIGRTAVTTTLAGCTAALTTLFGKRMQTGHWNVTDVCNGLLGGFAAITAGCSVVDPWAAIICGFIAAWVLIGCNMLADKFHYDDPLEAAQLHGGCGTWGIIFTALFAKKQYVNEVYGGSINRPYGLFLGGGARLLAAHLVQIVAIIAWVSVTMGTMFYVLHKLNLLRTSAEEEMAGLDLTSHGGMAYEYHDEGQEHSKKRAIEV 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03959 489 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519|GO:0016020|GO:0072488
Trre14g03959 489 PANTHER AMMONIUM TRANSPORTER 19 478 - -
Trre14g03959 489 SUPERFAMILY Ammonium transporter 44 452 - -
Trre14g03959 489 NCBIfam ammonium transporter 47 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Trre14g03959 489 FunFam Ammonium transporter 28 487 - -
Trre14g03959 489 Gene3D Ammonium transporter AmtB like domains 25 488 IPR029020 -
Trre14g03959 489 Pfam Ammonium Transporter Family 50 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03959 Trre-Chr14 48097699 48099168 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03959 5 488 Inorganic Solute Cotransporters AT4G13510 72.485 0.0 744
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03959 K03320 - cave:132166278 813.913