Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03955 ATGATGGTTGTGAGGCTTCCTGTGTTTTACAAGCAAAGAGACTTGCTCTTTTTCCCTTCATGGGCATACGCTGTTCCATCATGGATCCTAAAAATCCCCATAAGTTTTGCAGAAGTCGGTATTTGGCTACTCTTCACCTATTCTTTCATTGGTGATCCAAATGCTGTTGGAAGGACGTTCCTTCTTCTAGTGCTTGTCAACCAAATGGCTACTTTGTTTTGCCGATTAGTTGCTGCAATTAGTAGAGATATGGCAATGGCCGCGACTCTTGGGACGTTTTCATTGGGAATGCTTCTTGTTGCGGTGTCAAAAGACAATATACGAAAGTGGTGGTTATGGGAATTCTGGATATCACCTACTATGTATGGACAGAATGCCTTGTTGAATAACGAATTCCATGGGAAGACATGGAGACATGTTCCACCTAACTCAACGGAACCTCTAGGAGTTCAAATTTTGAAATCTCGCGGCTTCTTTACTCAGTCCTACTGGTATTGGATAGGTTTTATGGCATTGATTGGATACACGCTATTGTTCGTCTTTGGTCACATTCTTGCACTCACTTTCTTGAACCCACTTAAAGAACATCAGGTTGTTAAATCCGCTCTGTCGTTATCCAGGAAGCAACAATCTGTAAGGCATACTAAACAAAACCAGAAGAGAGGAATGGTTCTTCCTTTTGAACCACAATATATCACCTTTGATGAAGTAACATATTCAGTTGATATGCCAAAGGAAACGAAGAATCGGGGAGTTATTGGAGATAGGTTGAACCTTTTGAAGGGTGTTAGTGGTGCTTTCAGGCCAGGTGTTCTAACAGCACTAATGGGTGTGACTGGTGCTGGCAAAACAACTCTGATGGATGTGCTTTCTGGTAGATACACTGGTGGGTATATTAATGGGAGCATCACAATTTCTGGCTATCCAAAGACTAAGGAAAGCTTAGCAAGAATTTGTGGATACTGTGAACAAAATGATATTCACTCTCCTTATGTTACAGTATATGAATCATTGCTTTTTTCAGCATGGCTCCGATTGTCTGCAGAAATCACTACTGAAACCAGGAAGATGTTCGTCGAGGAAGTTATGGAGCTTGTGGATCTGACCCCACTAAGGGATACGATTGTTGGATTGCCTGGAGCTAATGGACTCTCGATGCAACAACGCAAAAGGTTAACTATTGCAGTTGAGTTAGTGGCCAATCCTTCTATTATATTCATGGACCAGCCAACTTGTGGACTAGATGCAAGATCGGTCGCAATTGTTATGAGAGCAATTAGAAATATAGTGGACAATGGAAGAACAATTGTTTGTGCCATTCATCAACCTAACATTGATATATTTGAATCTTTTGATGAGTTGTTCTTGATGAAGCAAGGAGGACAAGTGATATACGCGGGGCCAATTGGACATCATTCCTCCTCTTTAATAAGTTACTTTGAGGGGATCCATGGTGTCAACAAGTTTGAAGATGGCTGTAACCCAGCAACTTGGATGTTGGAAGTCACTTCTCCAGAAAAAGAAATGGAATTGGGGATTGATTTTTTTGAGGTGTACAAAGATTCAGAATTATACAGGAGAAACAAAGATCTTATTTCAGAATTGAGCATTCCAGCCCCTGATTCTGAGAATCTTCATTTTCCTTCGAAGTACTCAATCCCCTTTTTGACTCAATGCAAGGCTTGCTTATGGAAACAACATTGGTCTTACTGGCGTAATGCGCAGCACAATGGATTGAGGTTTCTCTTCACAATTGTTTCCTCCGTCTTTCTCGGGTGCATGTATTTTGGTATTGGCTCCAAAATGGAAAAGCAACAAAATATCTTTAACTCCATAGGCTCAATGTTGATCACTATTCTACTTATCGGTATCAAGAATGCAAATTCGGCGCAAGCGGTGGTAAGTACAGAGAGAGTCGTGTTCTATAGGGAAAATTCTGCAAGAATGTATTCTTCTCTAGCATATGCTGTTGGTCAGGCTCTAATTGAGATCCCTTATGTTCTTTTACAAGCTTTGATCTATGGAACTATAATTTATGCAATGATTGGATCTGTAATTCCTCCACCAAAAATTCCAATATGGTGGAGATGGTTTTATTGGGCAAATCCAGTAGCATGGAGTTTTAATGGATTGGCGACTTCACAATTTGGAGTTGCAGCTGTAGTTGTTGGATTCACACTTACCTTTGCATTGGTTTTTGTCATGTCTATCAAGATGTTTAATTTCCGATCGCGCTAA 2238 0.4053 MMVVRLPVFYKQRDLLFFPSWAYAVPSWILKIPISFAEVGIWLLFTYSFIGDPNAVGRTFLLLVLVNQMATLFCRLVAAISRDMAMAATLGTFSLGMLLVAVSKDNIRKWWLWEFWISPTMYGQNALLNNEFHGKTWRHVPPNSTEPLGVQILKSRGFFTQSYWYWIGFMALIGYTLLFVFGHILALTFLNPLKEHQVVKSALSLSRKQQSVRHTKQNQKRGMVLPFEPQYITFDEVTYSVDMPKETKNRGVIGDRLNLLKGVSGAFRPGVLTALMGVTGAGKTTLMDVLSGRYTGGYINGSITISGYPKTKESLARICGYCEQNDIHSPYVTVYESLLFSAWLRLSAEITTETRKMFVEEVMELVDLTPLRDTIVGLPGANGLSMQQRKRLTIAVELVANPSIIFMDQPTCGLDARSVAIVMRAIRNIVDNGRTIVCAIHQPNIDIFESFDELFLMKQGGQVIYAGPIGHHSSSLISYFEGIHGVNKFEDGCNPATWMLEVTSPEKEMELGIDFFEVYKDSELYRRNKDLISELSIPAPDSENLHFPSKYSIPFLTQCKACLWKQHWSYWRNAQHNGLRFLFTIVSSVFLGCMYFGIGSKMEKQQNIFNSIGSMLITILLIGIKNANSAQAVVSTERVVFYRENSARMYSSLAYAVGQALIEIPYVLLQALIYGTIIYAMIGSVIPPPKIPIWWRWFYWANPVAWSFNGLATSQFGVAAVVVGFTLTFALVFVMSIKMFNFRSR 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03955 745 Pfam Plant PDR ABC transporter associated 137 199 IPR013581 -
Trre14g03955 745 SMART AAA_5 269 461 IPR003593 GO:0016887
Trre14g03955 745 FunFam ABC transporter G family member 40 246 476 - -
Trre14g03955 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 252 469 IPR027417 -
Trre14g03955 745 Pfam ABC-2 type transporter 557 683 IPR013525 GO:0016020|GO:0140359
Trre14g03955 745 Pfam ABC-2 type transporter 2 132 IPR013525 GO:0016020|GO:0140359
Trre14g03955 745 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 232 484 IPR003439 GO:0005524
Trre14g03955 745 Gene3D - 231 478 IPR027417 -
Trre14g03955 745 PANTHER ATP-BINDING CASSETTE TRANSPORTER 683 717 - -
Trre14g03955 745 CDD ABCG_PDR_domain2 229 467 IPR034003 -
Trre14g03955 745 Pfam ABC transporter 260 411 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03955 Trre-Chr14 48073183 48077678 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03955 270 589 Calmodulin-binding Proteins AT2G36910 24.496 1.25e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03955 K08711 - gmx:732607 980.704