Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03945 ATGGATTCAACTTTGTGGAATTGGAATTGGAATACCCTTTTGAGTAAGATCCTTGAATTGCCTATTTTGGAACTTGTGGCAATATGTATTAATTTGGTTGTTCTGGTTTTGTTTCTATTAAGGGAGGTTTTTGTTTGTGTTGGTGGAAGAGTTTGGTTTTTTAAGGATAATGATAATAATGTTGTTGTTGGCAATGGTGGTTTGATTCGTGAAGAAACGGTTGAGGTTAGAATTGGGACATGGTTTAAGGTATCTGTGTTGTCTTGTTTTTATGTTTTGTTGGTGCAAGTTTTGGTTTTGGGATTTGAGGGTGCTGCTTTGATTAAGGACAAGTTTGTGGTTGTGGAAGATTTGTCTCTTGTTTCTGTGCCGTTTGTGCAAAGTTTGGTTTGGATTGTTTTGTGCTTCACTGCTTTGCATTGCAAGTACAAGGTGTCTCAGAAGTTTCCAATTTTGCTGAGAGTTTCTTGGTTTGTGCTGTTTGTTGTTTGTTTGTGTGGTTTATATGTTGATGGGAGAGGGTTTTGGGAGGAAGGTTCTAAGCATATGCGTTCTCATGTTTTGGCCAATTTCGCTGTTACCCCTGCTCTTGCCTTCTTGTGTTTTGTTGCAATTAGGGGTGTTTCTGGGATACAAGTTTGTAGGAATGCTGAGAATCAACAGCCATTGCTTCTTGATGAAGAGGAAGATGAAGAACCGGGGTGCCTTAAGGTTACTCCTTATAGCGATGCTGGACTTTTTAGTTTGGCTACGCTGTCTTGGCTTAACTCAATTCTTTCCATTGGTGCAAAGAGACCACTTGAGCTTAAAGACATTCCACTTGTTGCGCCTAAAGATCGAGCCAAAGCAAATTTTAAGGTTTTGAATTCAAATTGGGAGAAAATGAAGGCCGAAAGCACGTCGGCTCAGCCTTCATTAGCTTGGACACTTCTGAAGTCATTCTGGAAGGAGGCAGCTATTAATGCCATTTTTGCTGGTGTCACTACTCTTGTCTCATATGTAGGTCCATACATGATAAGTTACTTTGTTGATTACTTGAGTGGTATAGAGACTTACCCTCATGAGGGGTATGTCCTTGCAGGGATATTCTTCGTTGCAAAGCTTGTGGAGACCTTCACAACGAGGCAGTGGTATCTAGGAGTGGACATTTTGGGGATGCATGTTAGATCCGCTTTAACAGCGATGGTATATCAAAAGGGGCTTAGGTTATCGAGCTTAGCCAGGCAAAGTCACACAAGTGGTGAGATTGTTAACTACATGGCTATTGATGTTCAGAGGGTAGGGGACTACGCTTGGTATCTTCATGACATGTGGATGCTTCCTCTGCAGATTATTCTAGCCCTCGCAATTTTGTATAAGAATGTTGGAATTGCTTCCATTGCGACACTTGTTGCCACAATCATTTCTATTATAGTCACTGTTCCCGTGGCTCGGGTCCAAGAAGATTATCAAGACAAATTAATGGCTGCTAAGGATGAAAGAATGAGAAAAACATCTGAGTGCCTAAGGAACATGAGGATTCTCAAGCTGCAGGCTTGGGAGGACAGATATCGAATAAGATTAGAGGAAATGCGTGGAGTAGAGTTCAAGTGGCTTAGGAAAGCCCTATATTCTCAGGCTTTCATAACTTTCATGTTCTGGAGCTCACCCATATTTGTTTCAGCTGTCACTTTCGCTACTTGCATATTGTTGGGCGGTAAGCTAACTGCAGGAGGTGTACTTTCTGCTCTAGCGACTTTCAGGATCCTCCAAGAACCGTTGAGGAATTTTCCAGACTTGGTATCTACAATGGCTCAGACAAAAGTTTCTGTTGATCGTTTATCTTGTTTCCTACTCGAGGAAGAATTGCAAGAAGATGCAACCATTGTCTTGCCACAAGGAATTTCTAACATTGCCATAGAAATTAAGGATAGTGAATTCTCTTGGGACCTTTCATCTGCCAGGCCTACTCTTTCTGATATAAATATGAAAGTTGAAAAAGGGATGCGTGTCGCTGTTTGTGGTACGGTTGGTTCAGGGAAATCAAGTTTTCTTTCTTGCATCCTTGGAGAAATTCCTAAGCTTTCTGGTGAAGTCAGTGTGTGTGGTTCTTCTGCATATGTTTCCCAATCAGCATGGATACAATCGGGAACAATAGAAGAAAATATACTCTTTGGAAGTCCGAAGGACAAAGCAAAATACAAGAATGTTATTCATGCTTGTTCACTGAAAAAGGATTTAGAACTTTTCTCACATGGAGATCAGACAATTATTGGTGATAGAGGTATAAACCTAAGCGGGGGTCAGAAGCAGCGGGTACAGCTTGCCCGGGCACTCTACCAAGATGCTGATATTTATCTTCTAGATGATCCCTTCAGCGCAGTTGACGCGCACACCGGATCAGAGTTGTTTAGGGAGTATATATTGACGGCACTAGCAAATAAAACAGTCATTTTTGTGACCCATCAAGTTGAATTTCTTCCTGCTACTGATTTGATACTGGTTCTCAAGGAAGGTTGCATCATACAAGCTGGAAAGTATGATGATCTTTTACAAGCTGGAACAGATTTTAAAGCTCTAGTTTCAGCTCACCATGAAGCCATAGAGGCTATGGATATCCCTGCTCACTCCTCTGAAGATTCAGATGAAAATTTATCATTGGAGGCATCTGTTATGACCAGTAAGAAGTCCATGTGTTCTGCTAACGATATCGACAGTTTGACAAAGGAAATGCAAGAGGGACCATCATCTTCAGATCAAAAAACAACTAAGGAGAAGAAAAAAGCAAAAAGGTCGAGAAAAAAACAGCTTGTTCAGGAAGAGGAGAGGGTTAGAGGTAGAGTAAGCATGAAGGTGTATCTTTCATACATGGCAGCGGCATATAAAGGCTATTTGATTCCAGCCATAATCATAGCACAAGCGTTATTTCAGTTCCTTCAGATTGCTAGTAACTGGTGGATGGCGTGGGCTAACCCTCAAACAGAAGGAGATGAGCCCAAAGTAACTCCCATGGTTCTTCTTCTTGTTTACATGTCGCTTGCTTTTGGCAGTTCTTTGTTTATATTTGTAAGGGCTGTTCTAGTTGCTACATTTGGTCTCGCGGCTGCACAGAAGCTATTCTTGAAGATGCTTAGATGTGTTTTCCATGCACCGATGTATTTCTTTGACTCTACACCAGCTGGAAGGATCTTGAACCGGGTTTCAGTTGATCAAAGTGTTGTGGATCTTGACATCCCTTTTAGACTTGGCGGGTTTGCTGCAACAACAATACAGCTTATTGGTATTGTCGGCGTAATGACAGAAGTGACATGGCAAGTTTTACTCTTAGTCATCCCAATGGCCATTGCTTGTTTGTGGATGCAGAAATACTACATGGCTTCATCGAGGGAACTGGTCCGAATTGTAAGCATCCAGAAATCACCAATTATAAATCTTTTTGGTGAATCAATTGCTGGAGCATCCACCATCAGGGGTTTCGGACAAGAAAAAAGATTCATGAAGCGAAACCTCTATCTTCTCGATTGTTTTGCACGACCTTTCTTCTGCAGTCTTGCTGCTATTGAGTGGCTCTGCCTGCGTATGGAGTTACTGTCCACCTTTGTATTTGCTTTCTGCATGGTATTACTTGTTAGCTTTCCCCGTGGAACTATCGACCCAAGCATGGCTGGACTTGCTGTGACTTATGGTCTGAACTTAAATGCGCGCTTATCCCGTTGGATACTTAGCTTTTGCAAACTTGAAAATAAAATTATATCTATTGAGAGAATTTATCAGTACAGCCAAATTCCTAGTGAAGCCCCAGCAATAATTGAAGATTCTCGCCCTCCATCCTTATGGCCTGAAAATGGCACAATAGAAATAATTGATTTGAAGGTCCGTTACAAAGAAAATCTTCCTTTGGTGCTTCATGGAGTATCATGCACATTTCCTGGTGGAAAGAATATAGGGATAGTTGGACGAACCGGCAGTGGCAAATCTACTTTGATTCAAGCATTATTTCGATTGATTGAACCAGAAGATGGAAGTATCCGCATAGACAACATCAATATTTTAGAAATTGGTCTTCATGACCTCCGAAGCCATCTCAGTATCATACCACAGGATCCTACCTTATTTGAAGGGACCATTCGAGGCAATCTTGATCCTCTTGAGGAGCACTCAGATAAAGCGATTTGGGAGGCGCTAGATAAGTCTCAACTTGGAGATATCATTCGTGAGAAAGGACAAAAGCTTGATACGCCAGTTATAGAAAATGGAGACAATTGGAGTGTAGGACAGCGGCAACTTGTTTCTCTTGGCCGAGCTCTACTGAAGCAGTCAAAAATACTTGTACTTGATGAAGCAACAGCATCCGTCGATGCTGCCACTGATAATCTTATCCAGAAGATCATTCGAACAGAGTTCAAAGACTGCACTGTGGTCACCATTGCGCATCGTATTCCTACTGTCATTGACAGTGATCAAGTTCTGGTGCTCAGTGATGGTCGAGTTGCTGAGTTTGACACCCCTTTACGACTATTAGAGGACAAATCATCCATGTTTCTAAAGTTGGTGACTGAGTATTCCTCACGGACAAGTGGTATGCCAGAACTTTAG 4575 0.4175 MDSTLWNWNWNTLLSKILELPILELVAICINLVVLVLFLLREVFVCVGGRVWFFKDNDNNVVVGNGGLIREETVEVRIGTWFKVSVLSCFYVLLVQVLVLGFEGAALIKDKFVVVEDLSLVSVPFVQSLVWIVLCFTALHCKYKVSQKFPILLRVSWFVLFVVCLCGLYVDGRGFWEEGSKHMRSHVLANFAVTPALAFLCFVAIRGVSGIQVCRNAENQQPLLLDEEEDEEPGCLKVTPYSDAGLFSLATLSWLNSILSIGAKRPLELKDIPLVAPKDRAKANFKVLNSNWEKMKAESTSAQPSLAWTLLKSFWKEAAINAIFAGVTTLVSYVGPYMISYFVDYLSGIETYPHEGYVLAGIFFVAKLVETFTTRQWYLGVDILGMHVRSALTAMVYQKGLRLSSLARQSHTSGEIVNYMAIDVQRVGDYAWYLHDMWMLPLQIILALAILYKNVGIASIATLVATIISIIVTVPVARVQEDYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIRLEEMRGVEFKWLRKALYSQAFITFMFWSSPIFVSAVTFATCILLGGKLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSVDRLSCFLLEEELQEDATIVLPQGISNIAIEIKDSEFSWDLSSARPTLSDINMKVEKGMRVAVCGTVGSGKSSFLSCILGEIPKLSGEVSVCGSSAYVSQSAWIQSGTIEENILFGSPKDKAKYKNVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFREYILTALANKTVIFVTHQVEFLPATDLILVLKEGCIIQAGKYDDLLQAGTDFKALVSAHHEAIEAMDIPAHSSEDSDENLSLEASVMTSKKSMCSANDIDSLTKEMQEGPSSSDQKTTKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYKGYLIPAIIIAQALFQFLQIASNWWMAWANPQTEGDEPKVTPMVLLLVYMSLAFGSSLFIFVRAVLVATFGLAAAQKLFLKMLRCVFHAPMYFFDSTPAGRILNRVSVDQSVVDLDIPFRLGGFAATTIQLIGIVGVMTEVTWQVLLLVIPMAIACLWMQKYYMASSRELVRIVSIQKSPIINLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPRGTIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPAIIEDSRPPSLWPENGTIEIIDLKVRYKENLPLVLHGVSCTFPGGKNIGIVGRTGSGKSTLIQALFRLIEPEDGSIRIDNINILEIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLEEHSDKAIWEALDKSQLGDIIREKGQKLDTPVIENGDNWSVGQRQLVSLGRALLKQSKILVLDEATASVDAATDNLIQKIIRTEFKDCTVVTIAHRIPTVIDSDQVLVLSDGRVAEFDTPLRLLEDKSSMFLKLVTEYSSRTSGMPEL 1524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03945 1524 Gene3D ABC transporter type 1, transmembrane domain 300 609 IPR036640 GO:0005524|GO:0016020
Trre14g03945 1524 FunFam ABC transporter C family member 10 302 615 - -
Trre14g03945 1524 MobiDBLite consensus disorder prediction 902 933 - -
Trre14g03945 1524 CDD ABCC_MRP_domain2 1276 1496 - -
Trre14g03945 1524 Gene3D ABC transporter type 1, transmembrane domain 920 1259 IPR036640 GO:0005524|GO:0016020
Trre14g03945 1524 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 630 855 IPR027417 -
Trre14g03945 1524 ProSitePatterns ABC transporters family signature. 758 772 IPR017871 GO:0005524|GO:0016887
Trre14g03945 1524 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 241 1516 - -
Trre14g03945 1524 SUPERFAMILY ABC transporter transmembrane region 958 1258 IPR036640 GO:0005524|GO:0016020
Trre14g03945 1524 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 633 856 IPR003439 GO:0005524
Trre14g03945 1524 Pfam ABC transporter 1295 1443 IPR003439 GO:0005524
Trre14g03945 1524 Gene3D - 1261 1514 IPR027417 -
Trre14g03945 1524 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1278 1512 IPR003439 GO:0005524
Trre14g03945 1524 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 961 1231 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre14g03945 1524 CDD ABC_6TM_ABCC_D1 320 607 IPR044746 GO:0140359
Trre14g03945 1524 FunFam ABC transporter C family member 5 618 865 - -
Trre14g03945 1524 FunFam ABC transporter C family member 5 922 1259 - -
Trre14g03945 1524 CDD ABCC_MRP_domain1 633 832 - -
Trre14g03945 1524 SMART AAA_5 1304 1489 IPR003593 GO:0016887
Trre14g03945 1524 SMART AAA_5 660 841 IPR003593 GO:0016887
Trre14g03945 1524 CDD ABC_6TM_ABCC_D2 959 1253 IPR044726 GO:0140359
Trre14g03945 1524 Gene3D - 610 876 IPR027417 -
Trre14g03945 1524 FunFam ABC transporter C family member 3 1261 1513 - -
Trre14g03945 1524 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 319 599 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre14g03945 1524 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1268 1507 IPR027417 -
Trre14g03945 1524 Pfam ABC transporter 651 785 IPR003439 GO:0005524
Trre14g03945 1524 SUPERFAMILY ABC transporter transmembrane region 307 607 IPR036640 GO:0005524|GO:0016020
Trre14g03945 1524 Pfam ABC transporter transmembrane region 321 587 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre14g03945 1524 Pfam ABC transporter transmembrane region 962 1203 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03945 Trre-Chr14 47972691 47980368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03945 633 849 Calmodulin-binding Proteins AT2G36910 31.356 6.89e-22 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03945 - - gmx:100790550 2542.3