Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03923 ATGAGCAAGAAGGAAGAAATGGAGGATTTGGAAAAGAACAGTGGTGACTTTGTTGTTTCGAAGGAAGAAATTAAAGTTTTGATTGAACCTCTTTCCAAACCTCAACTCGTTGATCTTCTCTCTCAACTAGGGTCCAAATATCCTTCAATTGCACAAGAAATAGAAAGTTTTGCAAATGTTGATCGCACTCAACAAAAGCTTAATGCATTGCAAGTTCATGGAGAAATTAAGGAAGGGAATGTGATGCTTGATAGAGACACAGGAAAATCGGCTCAGAGTGCATTGAATGCACCAAGCAACTTCATTGATGGAGTAAAGGAATGTGTACTTGTATATCAATATAACAAGGATTTAAATATATCAAGTCACGTTACATACAAGACAGCGGAGGCTGCAAAGAATGCCATAAAAGACCTAGATCAAAGCACTCTTGGGGGAAGAACTATAACTGTAAAATATGATTTGCACAATGTTGGAGGTGGTCAGCCGTCTGTTCCTGCAAGAGTTGCACTGAATGCTAATGCACCTCCTTATCCAATGGAAGCCTTATCTATGACTCCAGAATATGTTGCACCGAATGCTAATGCACCGAATGCTGCACCTCCTTATCCATACCTGCAAACCGATGCACCACCTTTTCCATACCCCCAAACAGGTGCACCATGTGCCGCGTCTCCTTATCCATACCCCCAAACTGATGCATCACATGATGTACCACCTTATCCATACCCCCAAGCAGGTGCACGATATGCCGTGTCTCCTTATCCATACCTCCGAACTACTACACTATATGCTGCATCTCCTTATCCAACTCTTCTCACTGCACCTTCTACTCAGTATTATTATTATCCTCAGTATTATAATCATCCCAACCCATGA 879 0.4175 MSKKEEMEDLEKNSGDFVVSKEEIKVLIEPLSKPQLVDLLSQLGSKYPSIAQEIESFANVDRTQQKLNALQVHGEIKEGNVMLDRDTGKSAQSALNAPSNFIDGVKECVLVYQYNKDLNISSHVTYKTAEAAKNAIKDLDQSTLGGRTITVKYDLHNVGGGQPSVPARVALNANAPPYPMEALSMTPEYVAPNANAPNAAPPYPYLQTDAPPFPYPQTGAPCAASPYPYPQTDASHDVPPYPYPQAGARYAVSPYPYLRTTTLYAASPYPTLLTAPSTQYYYYPQYYNHPNP 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03923 292 SUPERFAMILY RNA-binding domain, RBD 105 164 IPR035979 GO:0003676
Trre14g03923 292 Gene3D - 59 168 IPR012677 -
Trre14g03923 292 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 124 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03923 Trre-Chr14 47795880 47797562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03923 16 90 C2H2 Transcription Factor Family AT2G19380 36.264 7.48e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03923 K12741 - gmx:100802911 152.525