Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03911 ATGGTGAAGCATAACAATGTTATCCCAAACGAGCATTTTCGCAAGCATTGGCAAAACTATGTGAAGACTTGGTTCAATCAACCAGCAAGGAAAACAAGAAGACACTTAGCTCGTCAAAAGAAGGCTGTTAAGATTTTCCCTAGGCCTACTGCTGGACCTCTTAGGCCAATTGTTCATGGACAAACTCAGAAATACAACATGAAACTTAGGGCTGGTAAAGGATTTTCTCTTGAGGAGTTGAAGGCTGCTGGCATTCCCAAAAAGCTTGCACCAACTATTAGCATTTCTGTTGATCATCGCAGAAAGAACAGATCCTTGGAGGGTCTGCAAGCCAACGTGCAGAGGCTGAAAACATACAAGGCCAAGTTGGTTGTCTTCCCAAGACGTGCACGCAAGGTCAAGGCTGGTGACTCCACTCTTGAGGAACTTGCAAATGCTACACAGGTTCAAGGATCATACTTGCCTATCGCGAGGGAGAAACCAACAGTAGAGCTTGTTAAGGTTACAGATGAAATGAAGGCATTTAAAGCTTACTAA 537 0.4395 MVKHNNVIPNEHFRKHWQNYVKTWFNQPARKTRRHLARQKKAVKIFPRPTAGPLRPIVHGQTQKYNMKLRAGKGFSLEELKAAGIPKKLAPTISISVDHRRKNRSLEGLQANVQRLKTYKAKLVVFPRRARKVKAGDSTLEELANATQVQGSYLPIAREKPTVELVKVTDEMKAFKAY 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03911 178 ProSitePatterns Ribosomal protein L13e signature. 70 84 IPR018256 GO:0003735|GO:0005840|GO:0006412
Trre14g03911 178 Pfam Ribosomal protein L13e 7 178 IPR001380 GO:0003735|GO:0005840|GO:0006412
Trre14g03911 178 Hamap 50S ribosomal protein L13e [rpl13e]. 45 128 IPR001380 GO:0003735|GO:0005840|GO:0006412
Trre14g03911 178 PANTHER 60S RIBOSOMAL PROTEIN L13 1 178 IPR001380 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03911 Trre-Chr14 47734305 47734841 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03911 2 178 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 86.441 2.18e-115 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03911 K02873 - gmx:100805957 334.724