Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03910 ATGGTGAAGCATAACAATGTTATCCCAAACGAGCATTTTCGCAAGCATTGGCAAAACTATGTGAAGACTTGGTTCAATCAACCAGCAAGGAAAACAAGAAGACACTTAGCTCGTCAAAAGAAGGCTGTTAAGATTTTCCCTAGGCCTACTGCTGGACCTCTTAGGCCAATTGTTCATGGACAAACTCAGAAATACAACATGAAACTTAGGGCTGGTAAAGGATTTTCTCTTGAGGAGTTGAAGGCTGCTGGCATTCCCAAAAAGCTTGCACCAACTATTAGCATTTCTGTTGATCATCGCAGAAAGAACAGATCCTTGGAGGGTCTGCAAGCCAACGTGCAGAGGCTGAAAACATACAAGGCCAAGTTGGTTGTCTTCCCAAGACGTGCACGCAAGGTCAAGGCTGGTGACTCCACTCTTGAGGAACTTGCAAATGCTACACAGGTTCAAGGATCATACTTGCCTATCGCGAGGGAGAAACCAACAGTAGAGCTTGTTAAGAGGGCTGCTGAGGCAGAGAAGGAAGAAAAGAAGTGA 537 0.4525 MVKHNNVIPNEHFRKHWQNYVKTWFNQPARKTRRHLARQKKAVKIFPRPTAGPLRPIVHGQTQKYNMKLRAGKGFSLEELKAAGIPKKLAPTISISVDHRRKNRSLEGLQANVQRLKTYKAKLVVFPRRARKVKAGDSTLEELANATQVQGSYLPIAREKPTVELVKRAAEAEKEEKK 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03910 178 Pfam Ribosomal protein L13e 7 175 IPR001380 GO:0003735|GO:0005840|GO:0006412
Trre14g03910 178 ProSitePatterns Ribosomal protein L13e signature. 70 84 IPR018256 GO:0003735|GO:0005840|GO:0006412
Trre14g03910 178 Hamap 50S ribosomal protein L13e [rpl13e]. 45 128 IPR001380 GO:0003735|GO:0005840|GO:0006412
Trre14g03910 178 PANTHER 60S RIBOSOMAL PROTEIN L13 1 174 IPR001380 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03910 Trre-Chr14 47734233 47734841 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03910 2 171 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 86.471 8.76e-110 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03910 K02873 - gmx:100805957 314.309