Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03908 ATGGCAAATATTCAAAAGGCTATTGCTCCTATCTTTTATATACTACTTATATCTTTGCTTCCATTGAAAATCATTTCATCACTAAAAACAGAAGCAGAAGCTCTTGTCAAATGGAAAAACAGTCTATCCTCTCCTCTTCCTTTTCCTTCTCCTCTCAACTCATGGTCACTCACCAACCATATCAACCTTTGCAATTGGGATTCTGTTGTTTGTGACACCACCAATACAACTCTCTTAGAGATAAACTTGTCTAATGCCAATCTCAGTGGAACACTCACTGGCTTGGATTTTGCTTCTCTCCCAAACCTCACCCGCCTCGACCTCGACAACAACAGGTTTAGTGGATCAATACCATCAACAATTGGCAACCTCTCCAGGCTCACTTTCTTGGACTTGGAAAACAACTTACTTGAAGACACACTCCCTTCTGAGCTAAGCCAACTAAGGGAACTTCGACATGTTAGTTTTTACAACAACAATTTCAATGGTACCATTCCTTATCAGCTCACTAATCTTCCCAAGGTAAGTTACCTTGAACTTGGAGCAAACTATTTTGTATCTTCCCTTGATTGGTCCCAATATTCAAACATGCCTTCCTTAAACTACCTTGGTTTGGAAGAAAATAGATTCACTGGTGACATTCCAAGTTTCATAGTTGAGTGCAAGAACTTAACATACCTTGACCTCTCTCAGAACAAATGGAATAGTAAAATACCAGAATCCATTTATAGTAATTTGAAAAGGCTTGAATATCTCAACCTCACCAACTGTAGACTAGAAGGAAAACTATCTTCCAACTTGTCTATGCTCTTGAATCTCAAAGAACTCCGTATCGGTAATAACATGTTTAATAGCCCTATTCCAACAGAGATAGGATTGTTATCTAGGCTTCAAATTCTTGAACTGAACAATGTTTCAGCCCACGGAGAAATTCCTTCTTCCATAGGTCAACTAAAGAAGCTAGTGCATCTTGATCTAAGTTCTAACTTTTTTAACTTTAGTGTCCCTTATGAGATTGGCCTATGCACAAATCTAACGTTCCTGAGCTTAGCTGGAAATAATCTAACAGGTTCTTTGCCTTTATCATTAGCTAATTTGACCAAACTTTCAGAACTAGGATTATCAGAAAATTCCTTTTCTGGTCAAATTTCTGCTTCATTGATCTCTAATTGGACTGAGTTAACTTCCTTGCAAGTCCAAAACAATAGATTAACAGGAACAGTTCCTCCACAGATTGGCTTGTTGAAAAAAATTACACTCCTTTATCTCTACAAAAATGATTTTTCTGGTCCTATTCCTAAAGAGATTGGAAACTTAAAGGAAATGACAGAGTTAGACCTTTCAGGAAACCATTTCTCCGGTCCAATTCCACCAACCATTTGGAACCTCACAAACATAGCAGTCATAAATCTTTTCTTCAACAACCTCTCTGGAAACATTCCAGTGGATATTGGAAACTTAACCTCATTGCAAATTTTTGATGTTGACAATAATAACTTGGATGGAGAATTACCACATACAATTTCTGATCTAACTTCCTTAACTTTTTTCTCTGTGTTCACAAATAATTTTTCGGGTAGCATTCCCAGAGACTTTGGAAAGAACAGTCCTTCTTTAACTAATGTCTACCTTTCAAACAATAGTTTCTCAGGAGAACTTCCTTCTAACATGTGCAGTGGCCTCAATCTACTTATTTTGACAGTAAATAACAATAGCTTTTCAGGGCCATTGCCAAACTCCTTGAGAAATTGTTCATCCTTAACAAGAGTTAGGCTTGACGATAACCAGTTCAGCGGAAACATCACAGAAGCATTTGGAATTCATCCAAATCTTACTTTCATCTCACTTAGCAGAAACGGTCTCCATGGCTATCTCTCTTCGGATTGGGGTAAATGTACCAACTTAACTGAGATGGAAATGGGTGGAAACAAACTTTCTGGAAAAATTCCATCTGAAATAAGTAAGCTAAGTAAATTACAATATCTTAGCCTGCACTCCAACGAATTCACCGGAAATATCCCACCTGAAATTGGAAATCTAAGCCTTCTCTACAAGTTGAACTTGAGCAGGAACCATTTTTCAGGAGAGATCCCAAAGAGTATTGGAAGATTATCTAAGCTTAACGTTGTTGATTTATCTGATAACAACTTCAACGGAAGCATTCCAAAAGAGATTAGTAATTGTAATCAGTTGCAAAGTCTTAACTTAAGCCATAACAATCTATCTGGCACGATACCTTATGAACTAGGTAATCTGTTCTACCTCCAATCCATGTTAGATCTCAGCAGCAACAATCTTTTGGGAGAAATTCCTCAAAATCTTCAAAAGTTAGCATCATTGGAGATCCTCAATGTCTCACACAACAATCTATCTGGAACAATCCCACAATCCTTTTCAAATATGCCCAGCCTTCAATCTGTGGATTTTTCTTATAACCACTTGTCAGGTTTGATCCCGACAGGAGGTGTTTTTCAAAAAGAAACCGCTGAAGCTTTTGCTGGGAATTCAGGTTTGTGTGGTGAGGTAAAAGGATTAACATGTGCCACAGCATTGTCTCAAGAAAATTCTGGAGGGACCAACAAAAAGGTACTTATTGGTGTTACTACATCAGTTGTTGGAGTACTATTTATAGGGATGATTGGTTTTGGAATCCTACTATTTCAAAGAAAAGCCAAAAAACTTAGTGAAGAATCCAAAAGCAATGAAGACAATGATCAATCTATTAGCATGGTATGGGGAAGAGATGCAAAATTCACATTTTCTGATCTTGTGAAAGCAACCAACGACTTCAATGAAAAGTACTGCATCGGAAAAGGAGGATTCGGAAGTGTTTATAAAGCAGAACTAGCTACAGGTCAAATAGTTGCTGTGAAAAGATTCAATATATCCGACTCTGATGACATTCCAAAAGTGAATCAGATGAGCTTCATAAATGAGATAAGAACACTAACAGGAGTAAGGCACCGGAATATAATAAAGCTTTATGGTTTCTGTTCTAGGAGGACACAAATGTTCCTTGTTTACGAACATGTAGAGCGAGGAAGTTTGGGAATATTGTTGTATGGAAGAGAAGGAAAATTGGAGCTAAGTTGGGGTACAAGGGTAGAAATTGTGCAAGGAATAGCACATGCAATTTCTTACCTTCATAGTGATTGCTCTCCACCAATTGTGCACAGAGATATAACATTGAATAATATACTACTGGATTCAAATTTAGTACCTCATCTTGCAGATTTTGGCACAGCAAAGCTTCTAAGCTCTAACAATTCAACCTGGTCCTCCGTTGCTGGATCTTACGGCTACATGGCTCCAGAGCTAGCACAAACTATGAGGGTGACTGAAAAGTGCGACGTGTATAGTTTTGGCGTGGTGGTGTTAGAGATATTGATGGGAAAACACCCTGGAGAATTCCTAGGTACCTTGTATTCAAACAAGTCTTTGACATTAATGGAAGTGCTTGTGAAGGATATTGTAGACCAAAGGCTTCCACCTCCAACAGACAAATTAGGTGAAACAATAGTGTTCACAATGAGAGTAGCATTGGCTTGCACGCGTGCTGCTCCCGAGTCTCGACCCACGATGCGATCTGTTGCGCAAGAACTATCAGCTACTACACAGGCTTATCTTTCTCAGTCATTTGGTATGATAACTGTAAGCAAGCTTACAGGATTCTAG 3675 0.3837 MANIQKAIAPIFYILLISLLPLKIISSLKTEAEALVKWKNSLSSPLPFPSPLNSWSLTNHINLCNWDSVVCDTTNTTLLEINLSNANLSGTLTGLDFASLPNLTRLDLDNNRFSGSIPSTIGNLSRLTFLDLENNLLEDTLPSELSQLRELRHVSFYNNNFNGTIPYQLTNLPKVSYLELGANYFVSSLDWSQYSNMPSLNYLGLEENRFTGDIPSFIVECKNLTYLDLSQNKWNSKIPESIYSNLKRLEYLNLTNCRLEGKLSSNLSMLLNLKELRIGNNMFNSPIPTEIGLLSRLQILELNNVSAHGEIPSSIGQLKKLVHLDLSSNFFNFSVPYEIGLCTNLTFLSLAGNNLTGSLPLSLANLTKLSELGLSENSFSGQISASLISNWTELTSLQVQNNRLTGTVPPQIGLLKKITLLYLYKNDFSGPIPKEIGNLKEMTELDLSGNHFSGPIPPTIWNLTNIAVINLFFNNLSGNIPVDIGNLTSLQIFDVDNNNLDGELPHTISDLTSLTFFSVFTNNFSGSIPRDFGKNSPSLTNVYLSNNSFSGELPSNMCSGLNLLILTVNNNSFSGPLPNSLRNCSSLTRVRLDDNQFSGNITEAFGIHPNLTFISLSRNGLHGYLSSDWGKCTNLTEMEMGGNKLSGKIPSEISKLSKLQYLSLHSNEFTGNIPPEIGNLSLLYKLNLSRNHFSGEIPKSIGRLSKLNVVDLSDNNFNGSIPKEISNCNQLQSLNLSHNNLSGTIPYELGNLFYLQSMLDLSSNNLLGEIPQNLQKLASLEILNVSHNNLSGTIPQSFSNMPSLQSVDFSYNHLSGLIPTGGVFQKETAEAFAGNSGLCGEVKGLTCATALSQENSGGTNKKVLIGVTTSVVGVLFIGMIGFGILLFQRKAKKLSEESKSNEDNDQSISMVWGRDAKFTFSDLVKATNDFNEKYCIGKGGFGSVYKAELATGQIVAVKRFNISDSDDIPKVNQMSFINEIRTLTGVRHRNIIKLYGFCSRRTQMFLVYEHVERGSLGILLYGREGKLELSWGTRVEIVQGIAHAISYLHSDCSPPIVHRDITLNNILLDSNLVPHLADFGTAKLLSSNNSTWSSVAGSYGYMAPELAQTMRVTEKCDVYSFGVVVLEILMGKHPGEFLGTLYSNKSLTLMEVLVKDIVDQRLPPPTDKLGETIVFTMRVALACTRAAPESRPTMRSVAQELSATTQAYLSQSFGMITVSKLTGF 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03908 1224 Gene3D Ribonuclease Inhibitor 28 192 IPR032675 -
Trre14g03908 1224 Pfam Leucine rich repeat N-terminal domain 29 72 IPR013210 -
Trre14g03908 1224 PRINTS Leucine-rich repeat signature 731 744 - -
Trre14g03908 1224 PRINTS Leucine-rich repeat signature 777 790 - -
Trre14g03908 1224 FunFam MDIS1-interacting receptor like kinase 2 195 389 - -
Trre14g03908 1224 Gene3D Phosphorylase Kinase; domain 1 889 1010 - -
Trre14g03908 1224 Gene3D Ribonuclease Inhibitor 193 241 IPR032675 -
Trre14g03908 1224 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1056 1068 IPR008266 GO:0004672|GO:0006468
Trre14g03908 1224 SUPERFAMILY Protein kinase-like (PK-like) 906 1201 IPR011009 -
Trre14g03908 1224 SUPERFAMILY RNI-like 522 819 - -
Trre14g03908 1224 Pfam Leucine rich repeat 683 741 IPR001611 GO:0005515
Trre14g03908 1224 Pfam Leucine rich repeat 198 259 IPR001611 GO:0005515
Trre14g03908 1224 Pfam Leucine rich repeat 758 814 IPR001611 GO:0005515
Trre14g03908 1224 Pfam Protein kinase domain 932 1199 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g03908 1224 FunFam Nuclear pore complex protein NUP107 28 191 - -
Trre14g03908 1224 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 434 532 - -
Trre14g03908 1224 Pfam Leucine Rich Repeat 102 124 IPR001611 GO:0005515
Trre14g03908 1224 CDD STKc_IRAK 936 1201 - -
Trre14g03908 1224 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 535 851 - -
Trre14g03908 1224 Coils Coil 1224 1224 - -
Trre14g03908 1224 SUPERFAMILY L domain-like 60 381 - -
Trre14g03908 1224 FunFam Leucine-rich repeat receptor protein kinase MSP1 892 1010 - -
Trre14g03908 1224 FunFam MDIS1-interacting receptor like kinase 2 1011 1207 - -
Trre14g03908 1224 SUPERFAMILY L domain-like 341 530 - -
Trre14g03908 1224 Gene3D Ribonuclease Inhibitor 484 849 IPR032675 -
Trre14g03908 1224 Gene3D Ribonuclease Inhibitor 242 483 IPR032675 -
Trre14g03908 1224 SMART LRR_sd22_2 632 655 - -
Trre14g03908 1224 SMART LRR_sd22_2 487 513 - -
Trre14g03908 1224 SMART LRR_sd22_2 342 363 - -
Trre14g03908 1224 SMART LRR_sd22_2 318 335 - -
Trre14g03908 1224 SMART LRR_sd22_2 439 465 - -
Trre14g03908 1224 SMART LRR_sd22_2 777 803 - -
Trre14g03908 1224 SMART LRR_sd22_2 124 147 - -
Trre14g03908 1224 SMART LRR_sd22_2 221 254 - -
Trre14g03908 1224 SMART LRR_typ_2 270 294 IPR003591 -
Trre14g03908 1224 SMART LRR_typ_2 366 390 IPR003591 -
Trre14g03908 1224 SMART LRR_typ_2 439 463 IPR003591 -
Trre14g03908 1224 SMART LRR_typ_2 100 123 IPR003591 -
Trre14g03908 1224 SMART LRR_typ_2 656 680 IPR003591 -
Trre14g03908 1224 SMART LRR_typ_2 777 800 IPR003591 -
Trre14g03908 1224 SMART LRR_typ_2 318 342 IPR003591 -
Trre14g03908 1224 SMART LRR_typ_2 487 511 IPR003591 -
Trre14g03908 1224 SMART LRR_typ_2 704 728 IPR003591 -
Trre14g03908 1224 SMART LRR_typ_2 801 826 IPR003591 -
Trre14g03908 1224 SMART LRR_typ_2 124 148 IPR003591 -
Trre14g03908 1224 ProSiteProfiles Protein kinase domain profile. 930 1209 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g03908 1224 ProSitePatterns Protein kinases ATP-binding region signature. 936 958 IPR017441 GO:0005524
Trre14g03908 1224 Gene3D Transferase(Phosphotransferase) domain 1 1011 1215 - -
Trre14g03908 1224 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 512 1203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03908 Trre-Chr14 47721345 47725106 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03908 25 674 Receptor kinase-like Gene Family AT4G08850 32.565 9.46e-79 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre14g03908 Pkinase 2.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03908 - - gmx:100809137 1763.81