Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre14g03903 | ATGGAAGATTCTGGAAAATCCATCATCAACAGTAGCAGTAAATTATTGAATCCATGGACGCTCCACTTTCAGAAACTCGCTCTCGAACTCAAATGCCCTCTCTGCCTGAGCTTGTTCAAACAACCGGTTTTGCTTCCATGCAATCACTTGTTCTGCAGTTCCTGCTTGGTGGATACTACTGAGATTGATATTTGTTCTGAGTGTGCTCTCTGTAGTACTAAGTACGCTCAAACAGATGTAAGGCATTTGTCTTTTGTTGAAAACATGGTAGCGATTTATAAGAATTTGGATGCGACTTTTTCTGCTAACGCGTTTCAGCAAAGATCTTCTGATAACACAAGGGTTTTGGAGCAGTGCCAAACTCTTCACAATTCAGCAGGTGGTAATAAAAAGGCTGATAAGGTTCTGCAGAATTCATGCATTTCAAATGGAGTTGGGGTTGTCCGGAATCACAAATCCAGAATTACAATGAATGGTGAGGAGCTTGAAATGTCTCGCAGAGGAGGGGCTAACAACCACGTTGCAGTGAAGCCTAATTCAATGAGATTTTCCCAGACGGAAATTGGGGGTCATATGGAAATGGATTTGAATCAAGTGACACAATCAGCACCTGATAGCCCTCCATTTTGTGATACCAAAGGTTCTGATAATGGTTGCAGCGATCAAAACAGTGAGAAGCCACTCAATCTTGAGAGATCTGAAAATTCATCATTGAAAAGAGCAAGCACAGGAAAAGGTAACTTGAAAGAAAGAATGGCTCAGTTTAGGTCTGAAAGTTCTGCCTCTGAAAATGAGGATCTTATGAGAGATCTCAAGAGACAAAAGAATCTTACTAATGGAGATGGTATTACTCAACAAAGCACCTCATATCATAATAAGCTCGTGGTTTCTCACCGTGACTCGGGCACTAATTTTGAAAGGGATCCTGGTGCAATCATCCCTTCAAATGAACCAAATGACTTGTGCCCAAATACTAGCATCATCTGCTTGTTTTGCCAGTCCTATAAAATTTCTGAGGCTACTGGTCCAATGCTGCATTATGCAAATGGGATTTCAGTTGTAGGAGATGCTGCAATGAAACCAAATGTCCTACATGTGCATAAAATCTGTATCGACTGGGCACCACAAGTGTATTTTGTTGGCGAAACTGTTAAGAATTTGAAGGCAGAAGTGGCCAGGGGAACAAAGCTTAAATGCACCAAATGTGGTCTAAAGGGAGCTGCTCTTGGTTGCTATGTCAAATCATGTAGAAGAACTTATCATGTCCCTTGTGCAATAGACATCTCTACTTGCCGCTGGGATCATGTGGATTATCTCTTGCTATGTCCTGTTCATTCAAATGTCAAATTTCCAAATGAGAAATCCAGTCATAATAAGCAGGCAATTCAGAACCATCCTGTTTCATCTCATCTGCCATTTCAACAGTCAAATCAACTGTTGGAAGCTTCACAACATTATGGTAAAAAAATGGTTTTCTGTGGATCTGCTCTATCAAATGAAGAAAAGGTGCTATTGATTAATTTTGCAAGCAAGGTTGGTGCTACAGTGACCAAGTGTTGGACCTCAAATGTCACCCATGTGATTGCAGCAACTGATGCAAATGGAGCATGCTCCAGGACATTGAAAGTTTTGAGGGCAATTCTAAATGGACAATGGATCCTAAAAATTGACTGGATAAGAGCATGCATGGAAGCGATGGATCTCGTAGATGAAGAACTGTATGAAGTTGATCTTGACAACCAAGGGTGTCATGGTGGCCCAAAAGCTGGCAGACTTAGGGCATTGGCCAATGAGCCAAAGCTATTCAGTGGCTTAAAGTTTTACTTTTCTGGTGATTATGATTTGAGTTATAAGAAATATCTTGAAGATTTAGTTGAAGGGGGAGGAGGCGCTGTTTTGAAAAGCAAGGATGAATTGGAAGTAGGAAGAAATGCAAACTTGCTAGCTGTTTACAATCTTGATCCTCCACAAGGATGTAAGCTGGGGGAGGAAGTTTCAATTCTTTGGCAGAGACTGAATGAAGCAGAGGATTTAACTGCCAATACTGTTGGTCACACTTGGATTCTGGAGTCAATTGCTGCATGTAAGTTGCAGCCTTTTAGTTAG | 2106 | 0.4112 | MEDSGKSIINSSSKLLNPWTLHFQKLALELKCPLCLSLFKQPVLLPCNHLFCSSCLVDTTEIDICSECALCSTKYAQTDVRHLSFVENMVAIYKNLDATFSANAFQQRSSDNTRVLEQCQTLHNSAGGNKKADKVLQNSCISNGVGVVRNHKSRITMNGEELEMSRRGGANNHVAVKPNSMRFSQTEIGGHMEMDLNQVTQSAPDSPPFCDTKGSDNGCSDQNSEKPLNLERSENSSLKRASTGKGNLKERMAQFRSESSASENEDLMRDLKRQKNLTNGDGITQQSTSYHNKLVVSHRDSGTNFERDPGAIIPSNEPNDLCPNTSIICLFCQSYKISEATGPMLHYANGISVVGDAAMKPNVLHVHKICIDWAPQVYFVGETVKNLKAEVARGTKLKCTKCGLKGAALGCYVKSCRRTYHVPCAIDISTCRWDHVDYLLLCPVHSNVKFPNEKSSHNKQAIQNHPVSSHLPFQQSNQLLEASQHYGKKMVFCGSALSNEEKVLLINFASKVGATVTKCWTSNVTHVIAATDANGACSRTLKVLRAILNGQWILKIDWIRACMEAMDLVDEELYEVDLDNQGCHGGPKAGRLRALANEPKLFSGLKFYFSGDYDLSYKKYLEDLVEGGGGAVLKSKDELEVGRNANLLAVYNLDPPQGCKLGEEVSILWQRLNEAEDLTANTVGHTWILESIAACKLQPFS | 701 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre14g03903 | 701 | MobiDBLite | consensus disorder prediction | 199 | 243 | - | - | |
| Trre14g03903 | 701 | ProSitePatterns | Zinc finger RING-type signature. | 47 | 56 | IPR017907 | - | |
| Trre14g03903 | 701 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 15 | 106 | IPR013083 | - | |
| Trre14g03903 | 701 | ProSiteProfiles | BRCT domain profile. | 597 | 701 | IPR001357 | - | |
| Trre14g03903 | 701 | FunFam | Breast cancer type 1 susceptibility protein homolog | 487 | 593 | - | - | |
| Trre14g03903 | 701 | Pfam | BRCA1 C Terminus (BRCT) domain | 488 | 563 | IPR001357 | - | |
| Trre14g03903 | 701 | SUPERFAMILY | BRCT domain | 601 | 700 | IPR036420 | - | |
| Trre14g03903 | 701 | Pfam | BRCT domain, a BRCA1 C-terminus domain | 599 | 700 | IPR001357 | - | |
| Trre14g03903 | 701 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 322 | 448 | IPR013083 | - | |
| Trre14g03903 | 701 | SMART | ring_2 | 32 | 71 | IPR001841 | - | |
| Trre14g03903 | 701 | Pfam | Zinc finger, C3HC4 type (RING finger) | 32 | 71 | IPR018957 | GO:0046872 | |
| Trre14g03903 | 701 | SUPERFAMILY | RING/U-box | 24 | 90 | - | - | |
| Trre14g03903 | 701 | CDD | BRCT_Bard1_rpt1 | 491 | 569 | - | - | |
| Trre14g03903 | 701 | FunFam | Breast cancer associated RING 1 | 323 | 448 | - | - | |
| Trre14g03903 | 701 | Pfam | PHD-like zinc-binding domain | 367 | 445 | - | - | |
| Trre14g03903 | 701 | PANTHER | BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 | 10 | 277 | IPR031099 | GO:0006281|GO:0006974 | |
| Trre14g03903 | 701 | Gene3D | BRCT domain | 599 | 695 | IPR036420 | - | |
| Trre14g03903 | 701 | Gene3D | BRCT domain | 486 | 592 | IPR036420 | - | |
| Trre14g03903 | 701 | MobiDBLite | consensus disorder prediction | 199 | 267 | - | - | |
| Trre14g03903 | 701 | SUPERFAMILY | BRCT domain | 490 | 577 | IPR036420 | - | |
| Trre14g03903 | 701 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 326 | 446 | IPR034732 | - | |
| Trre14g03903 | 701 | ProSiteProfiles | BRCT domain profile. | 487 | 576 | IPR001357 | - | |
| Trre14g03903 | 701 | ProSiteProfiles | Zinc finger RING-type profile. | 32 | 72 | IPR001841 | - | |
| Trre14g03903 | 701 | SMART | BRCT_7 | 599 | 695 | IPR001357 | - | |
| Trre14g03903 | 701 | SMART | BRCT_7 | 484 | 566 | IPR001357 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre14g03903 | Trre-Chr14 | 47666885 | 47673011 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre14g03903 | 520 | 633 | Core DNA Replication Machinery Family | AT4G02110 | 31.667 | 7.31e-06 | 47.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre14g03903 | K10683 | - | gmx:100784883 | 929.087 |