Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03879 ATGGGTTTGAGAGACATAGGAGCTTCACTACCTCCTGGATTTAGATTTTATCCAAGTGATGAAGAATTGGTTTGTCACTATCTTTACAAAAAGATCACAAATGAGGAAGTTCTTAAGGGTACTTTGATTGAAATTGATCTTCACATATGTGAACCATGGCAACTTCCTGAGGTGGCAAAGCTAAATGCAAATGAATGGTATTTCTTTAGCTTTAGGGACCGTAAATATGCAACTGGATTTAGAACAAATAGAGCAACTATCTCTGGGTATTGGAAAGCAACTGGGAAAGATCGTACGGTGTTAGATCCAATAACTCAAGAGGTTGTAGGAATGAGGAAAACATTGGTGTTCTATAAGAACAGAGCTCCAAATGGTATCAAAACTGGATGGATTATGCATGAATTTCGTTTGGAGACACCTCACATGCCTCCTAAGGAGGACTGGGTGTTGTGTAGAGTCTTTCACAAAAGCAAAGAAGACAACAACAATAACAACAACAATAACAATTCCAAACTCAACACACAACAACAACAACTCATGTATGAGACAACACCTCCATCCCTAACTTTGTCGTCATCATCTCCATCAAATTACCAAACTATCCCTATTCCCTATAACCGAATTGATTCTTTTTCTTCATCTATGACAACACTTCATCATTTAAATCCAAACCAAAACAATACTACTTCCATCATGAATAATCTCCTTCACTATTCACGTGAAACAAATAATCCAAATAATAATAATAATAATAATGATAGTATTATTACTCAAATTAGTTCCAAATGTGATGATGGATATGGATTCTTGTGGAACATGGATTTGGAAGAAAATAGTCTAGTAGAAGAAGATGGCGTGGCTTCAAACTTGGATGCAATAAGATTTGAGGTTGATAATAATAATAATATGGTCATGCTATAA 921 0.354 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKITNEEVLKGTLIEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATISGYWKATGKDRTVLDPITQEVVGMRKTLVFYKNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEDNNNNNNNNNSKLNTQQQQLMYETTPPSLTLSSSSPSNYQTIPIPYNRIDSFSSSMTTLHHLNPNQNNTTSIMNNLLHYSRETNNPNNNNNNNDSIITQISSKCDDGYGFLWNMDLEENSLVEEDGVASNLDAIRFEVDNNNNMVML 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03879 306 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Trre14g03879 306 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Trre14g03879 306 Gene3D NAC domain 19 162 IPR036093 GO:0003677|GO:0006355
Trre14g03879 306 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Trre14g03879 306 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03879 Trre-Chr14 47442276 47449830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03879 6 159 NAC Transcription Factor Family AT1G56010 59.259 5.66e-66 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre14g03879 NAM 1.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03879 - - tpra:123889826 511.916