Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03878 ATGAATCTTTCAGTTCCGCCTGGTTTTGCATCCCTAACATCTTTTTTTCTCAAAAGGGATGACAAGGTTACGAAAACCGATAAGTCTGACCCAATCCAAACAGAGACTAATCCTGAGATTGATGACAATGCTTCATATAATCAATTTTATATGCAACGGCCATGGATAATATTGGACCAGAGCAAGCACAAACCTGTGGAATCTCACACAGAGCATCTTCCCGTGGTTAATTCGAATCCCCTTACAAATTCTTCTCGTCCAAAAGGGACCACATATGGATGTCCAAACTGCAGTAATTGTGTAAAGGTAACAGCGAGGTGGCGTCCAAAGGATGCAAAAAGAGAAATTCTGGAGGAAGTTCCAATTTTCTATCCAACAGAAGAGGAATTCAAAGACACACTTAAATATATCGCAAGCATACGTTCAAGAGCAGAACCTTATGGAATTTGCCGTATAGTCCCTCCTACCAGCTGGGAACCACCATGCACTCCTGAGATAAAGAATGTATTGGAAAACTCTGAATTTGTTGCTCGAATTCAGCGAATTGATGGGAACCAAGTTCAGCTTGCACCAGAAATTATGGCTAGCTCTTGTGATACTACAGAAACCAAGAGAAGAAAAGTGATGAAAGTAGCCATTGACTCTCACCTTGGTAATAGAAGCACTTGCACCCCTAATAATGGGAATGTTGAAGGCCATGACAATGAGCCTGAACATGGTCCTAAATTCACTATCAAAACATTTAAGAAAATGGCAGATGAATTTAAGACCCAATACTTCAACTACAAGAATAAGATTATGGGTTCTGATCCATCTGTTGAGAATATTGAGGATGAATACAGACGGATTGTTCAAAGTCCAACTGAAGAAATTGAGGTTCTCTGTGGTGAGACTTTGGAGGCTGGAGATTTTAGCAGTGGATTTCCAATTCCAACGGTTTCTGATCCTCTAAAGGCGAATAATTACGCTGAATATTTGAAATCTGGATGGTACTTAAATAATATGCTTTCACTCCCTGGTTCTCTTCTTTCTTTTGAAAGCCCTGAAGCTGCACGCAAATTCTCCCCTAGGGTACATGTAGGAATGTGCTTCTCTCCACTCAAATGGAAAGTTGAAGAGCACCAATTATACTCATTGTGTTGCTTGCATTTGGGTGAACCCAAAGTATGGTATAGTGTCCCAGGAAGATTTGCTGCCGACTTTGAAACAATTTGGAAAAAGAATCTCCGAGCGCTAAATATGTATGCAGGACAGCCTGATATGCATGATAATCTGGCTATGCAGTTATCCTGCTCAATATTGAAGGATGCTGGTATACCAGTATATCGTTGTGTTCAGTATCCTCGGGAATTTGTTCTTGTCTTACCTGGAGCATATCATTCAGGATTTGATTGTGGTTTCAACTGTTCTGAAGTAGCAAGTTTTGCTCCTCTTGAGTGGCTGCCACATGGACAGAATGTAGTAGAACTATATTGTGAACAGAAGAGAAAGACATTAATTTCATACGATAAGCTGTTACTGGGAACAGCAAGGGAAGCTGTGAGGACCCGATGGGAAATTGATATATGTATGAAGAGCACGCCCGACAACCTAACATGTAAAGATGCTTATCAAAGAGATGGGATCTTAACAAAAGCTTTGAATTCTCGCATCAGGAGTGAAAGTTTGAAAAGGAAATTCATTTCCACTTCTTTCAAATCACAAAAAATGAATGAAAATTTTGATGCCAGTTGTAAAAGGGAATGTGGCATATGTCTGCGTGATTTATTCCTGTCTGCTGTTGGCTGTTCATGTTCAGATGACAAGTTTGCGTGTCTTGATCATGCAAAACAGCTTTGTTCTTGCCCTTGGTCACACAAAATTCTCCTCTACCGTTATGAAATCAGTGAATTGGAGGTTCTTCATCAAGCTTTGGATGGAAAACTAAGTTCAGTCTATAAATGGGCTAAAGAGGATCTTGGTTTAACCGTGCGCTCAGTTGCCTCCAAGAAATCAAAAGAAATCCCAGAAAAAGTAAATGATTCAAAAGGCTTGTTGAAAGAACCTATGTCGCGGTGGGCACAAGATGCATACAACAAGTGGAGACGGTGTCAATCGCAGGCAACACCAAATGCTTCAGAGGGGAAACAAAGAGAAAAGGCCTTCCAAGCCCAGCAGACATGTAGTAGCACTCACAATAGTTCGTGCGCCATTCATCCAAAAAGGAACACAACTTTACTTCATTCAACAATATCAAACGAGATCAAAGCTAAAGAGAAAATGGCGGGGCACAATTCTGTTGCAACAGGCATTGCCGAAGGAAGTAAGTCTGCTGGGATCAAACCTGATAGCAAGGCAATTGGGGATAAGTTCACGACTTCAAAGAAAGTAGGAGACCCAAAAGCTTCTGAAACTCCACGCTCGCGTTTCTTGTCTTTTGTACAGGAGAACATTTTGGTTGAAGTTTCGTCTAGTTCTTCAGAATCCGATTAG 2472 0.409 MNLSVPPGFASLTSFFLKRDDKVTKTDKSDPIQTETNPEIDDNASYNQFYMQRPWIILDQSKHKPVESHTEHLPVVNSNPLTNSSRPKGTTYGCPNCSNCVKVTARWRPKDAKREILEEVPIFYPTEEEFKDTLKYIASIRSRAEPYGICRIVPPTSWEPPCTPEIKNVLENSEFVARIQRIDGNQVQLAPEIMASSCDTTETKRRKVMKVAIDSHLGNRSTCTPNNGNVEGHDNEPEHGPKFTIKTFKKMADEFKTQYFNYKNKIMGSDPSVENIEDEYRRIVQSPTEEIEVLCGETLEAGDFSSGFPIPTVSDPLKANNYAEYLKSGWYLNNMLSLPGSLLSFESPEAARKFSPRVHVGMCFSPLKWKVEEHQLYSLCCLHLGEPKVWYSVPGRFAADFETIWKKNLRALNMYAGQPDMHDNLAMQLSCSILKDAGIPVYRCVQYPREFVLVLPGAYHSGFDCGFNCSEVASFAPLEWLPHGQNVVELYCEQKRKTLISYDKLLLGTAREAVRTRWEIDICMKSTPDNLTCKDAYQRDGILTKALNSRIRSESLKRKFISTSFKSQKMNENFDASCKRECGICLRDLFLSAVGCSCSDDKFACLDHAKQLCSCPWSHKILLYRYEISELEVLHQALDGKLSSVYKWAKEDLGLTVRSVASKKSKEIPEKVNDSKGLLKEPMSRWAQDAYNKWRRCQSQATPNASEGKQREKAFQAQQTCSSTHNSSCAIHPKRNTTLLHSTISNEIKAKEKMAGHNSVATGIAEGSKSAGIKPDSKAIGDKFTTSKKVGDPKASETPRSRFLSFVQENILVEVSSSSSESD 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03878 823 ProSiteProfiles JmjN domain profile. 120 161 IPR003349 -
Trre14g03878 823 Pfam jmjN domain 121 154 IPR003349 -
Trre14g03878 823 Pfam JmjC domain, hydroxylase 358 474 IPR003347 -
Trre14g03878 823 SMART JmjN_1 119 160 IPR003349 -
Trre14g03878 823 MobiDBLite consensus disorder prediction 23 43 - -
Trre14g03878 823 Gene3D Cupin 105 476 - -
Trre14g03878 823 ProSiteProfiles JmjC domain profile. 327 492 IPR003347 -
Trre14g03878 823 MobiDBLite consensus disorder prediction 218 240 - -
Trre14g03878 823 MobiDBLite consensus disorder prediction 68 88 - -
Trre14g03878 823 MobiDBLite consensus disorder prediction 766 802 - -
Trre14g03878 823 MobiDBLite consensus disorder prediction 781 796 - -
Trre14g03878 823 Pfam C5HC2 zinc finger 582 632 IPR004198 -
Trre14g03878 823 SUPERFAMILY Clavaminate synthase-like 277 519 - -
Trre14g03878 823 MobiDBLite consensus disorder prediction 72 88 - -
Trre14g03878 823 SMART cupin_9 327 492 IPR003347 -
Trre14g03878 823 PANTHER LYSINE-SPECIFIC DEMETHYLASE 114 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03878 Trre-Chr14 47419677 47423957 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03878 4 671 JUMONJI Transcription Factor Family AT1G08620 45.584 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre14g03878 JmjC 7e-29 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03878 K11446 - gmx:100804864 1024.23