Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03877 ATGAATCTTTCAGTTCCGCCTGGTTTTGCATCCCTAACATCTTTTTTTCTCAAAAGGGATGACAAGGTTACGAAAACCGATAAGTCTGACCCAATCCAAACAGAGACTAATCCTGAGATTGATGACAATGCTTCATATAATCAATTTTATATGCAACGGCCATGGATAATATTGGACCAGAGCAAGCACAAACCTGTGGAATCTCACACAGAGCATCTTCCCGTGGTTAATTCGGTAACAGCGAGGTGGCGTCCAAAGGATGCAAAAAGAGAAATTCTGGAGGAAGTTCCAATTTTCTATCCAACAGAAGAGGAATTCAAAGACACACTTAAATATATCGCAAGCATACGTTCAAGAGCAGAACCTTATGGAATTTGCCGTATAGTCCCTCCTACCAGCTGGGAACCACCATGCACTCCTGAGATAAAGAATGTATTGGAAAACTCTGAATTTGTTGCTCGAATTCAGCGAATTGATGGGAACCAAGTTCAGCTTGCACCAGAAATTATGGCTAGCTCTTGTGATACTACAGAAACCAAGAGAAGAAAAGTGATGAAAGTAGCCATTGACTCTCACCTTGGTAATAGAAGCACTTGCACCCCTAATAATGGGAATGTTGAAGGCCATGACAATGAGCCTGAACATGGTCCTAAATTCACTATCAAAACATTTAAGAAAATGGCAGATGAATTTAAGACCCAATACTTCAACTACAAGAATAAGATTATGGGTTCTGATCCATCTGTTGAGAATATTGAGGATGAATACAGACGGATTGTTCAAAGTCCAACTGAAGAAATTGAGGTTCTCTGTGGTGAGACTTTGGAGGCTGGAGATTTTAGCAGTGGATTTCCAATTCCAACGGTTTCTGATCCTCTAAAGGCGAATAATTACGCTGAATATTTGAAATCTGGATGGTACTTAAATAATATGCTTTCACTCCCTGGTTCTCTTCTTTCTTTTGAAAGCCCTGAAGCTGCACGCAAATTCTCCCCTAGGGTACATGTAGGAATGTGCTTCTCTCCACTCAAATGGAAAGTTGAAGAGCACCAATTATACTCATTGTGTTGCTTGCATTTGGGTGAACCCAAAGTATGGTATAGTGTCCCAGGAAGATTTGCTGCCGACTTTGAAACAATTTGGAAAAAGAATCTCCGAGCGCTAAATATGTATGCAGGACAGCCTGATATGCATGATAATCTGGCTATGCAGTTATCCTGCTCAATATTGAAGGATGCTGGTATACCAGTATATCGTTGTGTTCAGTATCCTCGGGAATTTGTTCTTGTCTTACCTGGAGCATATCATTCAGGATTTGATTGTGGTTTCAACTGTTCTGAAGTAGCAAGTTTTGCTCCTCTTGAGTGGCTGCCACATGGACAGAATGTAGTAGAACTATATTGTGAACAGAAGAGAAAGACATTAATTTCATACGATAAGCTGTTACTGGGAACAGCAAGGGAAGCTGTGAGGACCCGATGGGAAATTGATATATGTATGAAGAGCACGCCCGACAACCTAACATGTAAAGATGCTTATCAAAGAGATGGGATCTTAACAAAAGCTTTGAATTCTCGCATCAGGAGTGAAAGTTTGAAAAGGAAATTCATTTCCACTTCTTTCAAATCACAAAAAATGAATGAAAATTTTGATGCCAGTTGTAAAAGGGAATGTGGCATATGTCTGCGTGATTTATTCCTGTCTGCTGTTGGCTGTTCATGTTCAGATGACAAGTTTGCGTGTCTTGATCATGCAAAACAGCTTTGTTCTTGCCCTTGGTCACACAAAATTCTCCTCTACCGTTATGAAATCAGTGAATTGGAGGTTCTTCATCAAGCTTTGGATGGAAAACTAAGTTCAGTCTATAAATGGGCTAAAGAGGATCTTGGTTTAACCGTGCGCTCAGTTGCCTCCAAGAAATCAAAAGAAATCCCAGAAAAAGTAAATGATTCAAAAGGCTTGTTGAAAGAACCTATGTCGCGGTGGGCACAAGATGCATACAACAAGTGGAGACGGTGTCAATCGCAGGCAACACCAAATGCTTCAGAGGGGAAACAAAGAGAAAAGGCCTTCCAAGCCCAGCAGACATGTAGTAGCACTCACAATAGTTCGTGCGCCATTCATCCAAAAAGGAACACAACTTTACTTCATTCAACAATATCAAACGAGATCAAAGCTAAAGAGAAAATGGCGGGGCACAATTCTGTTGCAACAGGCATTGCCGAAGGAAGTAAGTCTGCTGGGATCAAACCTGATAGCAAGGCAATTGGGGATAAGTTCACGACTTCAAAGAAAGTAGGAGACCCAAAAGCTTCTGAAACTCCACGCTCGCGTTTCTTGTCTTTTGTACAGGAGAACATTTTGGTTGAAGTTTCGTCTAGTTCTTCAGAATCCGATTAG 2400 0.4092 MNLSVPPGFASLTSFFLKRDDKVTKTDKSDPIQTETNPEIDDNASYNQFYMQRPWIILDQSKHKPVESHTEHLPVVNSVTARWRPKDAKREILEEVPIFYPTEEEFKDTLKYIASIRSRAEPYGICRIVPPTSWEPPCTPEIKNVLENSEFVARIQRIDGNQVQLAPEIMASSCDTTETKRRKVMKVAIDSHLGNRSTCTPNNGNVEGHDNEPEHGPKFTIKTFKKMADEFKTQYFNYKNKIMGSDPSVENIEDEYRRIVQSPTEEIEVLCGETLEAGDFSSGFPIPTVSDPLKANNYAEYLKSGWYLNNMLSLPGSLLSFESPEAARKFSPRVHVGMCFSPLKWKVEEHQLYSLCCLHLGEPKVWYSVPGRFAADFETIWKKNLRALNMYAGQPDMHDNLAMQLSCSILKDAGIPVYRCVQYPREFVLVLPGAYHSGFDCGFNCSEVASFAPLEWLPHGQNVVELYCEQKRKTLISYDKLLLGTAREAVRTRWEIDICMKSTPDNLTCKDAYQRDGILTKALNSRIRSESLKRKFISTSFKSQKMNENFDASCKRECGICLRDLFLSAVGCSCSDDKFACLDHAKQLCSCPWSHKILLYRYEISELEVLHQALDGKLSSVYKWAKEDLGLTVRSVASKKSKEIPEKVNDSKGLLKEPMSRWAQDAYNKWRRCQSQATPNASEGKQREKAFQAQQTCSSTHNSSCAIHPKRNTTLLHSTISNEIKAKEKMAGHNSVATGIAEGSKSAGIKPDSKAIGDKFTTSKKVGDPKASETPRSRFLSFVQENILVEVSSSSSESD 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03877 799 SMART cupin_9 303 468 IPR003347 -
Trre14g03877 799 SUPERFAMILY Clavaminate synthase-like 253 495 - -
Trre14g03877 799 SMART JmjN_1 95 136 IPR003349 -
Trre14g03877 799 MobiDBLite consensus disorder prediction 742 778 - -
Trre14g03877 799 MobiDBLite consensus disorder prediction 194 216 - -
Trre14g03877 799 MobiDBLite consensus disorder prediction 757 772 - -
Trre14g03877 799 Pfam jmjN domain 97 130 IPR003349 -
Trre14g03877 799 Gene3D Cupin 81 452 - -
Trre14g03877 799 ProSiteProfiles JmjC domain profile. 303 468 IPR003347 -
Trre14g03877 799 ProSiteProfiles JmjN domain profile. 96 137 IPR003349 -
Trre14g03877 799 PANTHER LYSINE-SPECIFIC DEMETHYLASE 90 718 - -
Trre14g03877 799 Pfam C5HC2 zinc finger 558 608 IPR004198 -
Trre14g03877 799 Pfam JmjC domain, hydroxylase 334 450 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03877 Trre-Chr14 47419677 47423957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03877 4 647 JUMONJI Transcription Factor Family AT1G08620 44.620 4.71e-172 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre14g03877 JmjC 6.7e-29 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03877 K11446 - gmx:100804864 978.008