Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03858 ATGGGGTTGAAGAAAGGTCCATGGACTCAAGAAGAAGATAGAATTCTCATCAATCACATAAACACTTATGGCCATTCTAATTGGCGTGCTCTTCCAAAACAAGCTGGGTTGTTAAGGTGTGGAAAAAGTTGTAGATTGAGATGGGCAAATTATTTGAAACCAGATATCAAACGGGGTAATTTTACTAAAGAAGAAGAGGATGCAATAATCAATTTGCACCAAATGTTGGGAAATAGGTGGTCAACTATAGCAGCAAGATTACCAGGACGAACAGACAATGAAATAAAAAATGTATGGCACACCCACTTGAAGAAGAGGCTGCCACAAAACCAACAAGGCCACAACAATAGCCCAAAAAGAAATAAGAAACAAACCAATTTGGACTTTGAAGCCTCCAAATCAGACCAAGATATCAAACAAGAACAAAATAATGTTGATGATATGCCACAATGTTCTAGTGACATGTCATACCATAATAATAGTAGCAATAGCATTGCTACTACTAATGATAATAATAATAATCTTGACATGTTCATAAATAATGATAAAGATGATGTTGATTCAGCAGAAAATAATCTTGCATTGGATGAAGATTTTTGGTCTGAAGTTTTGTCATCTGATAATTCTAGCAATGAGACAAGTGATGGTTTTATGGATATTGGTGCTGATAATTATCAATTTCAAGCTTCATTTTCTCCATTAGGGACTGAAGAAGGAGTGTTTGATTCAAGTTCATTGAGTTTATGCCAAGATATGGACTTTTGGCATGATGTTTATGCAAGAGCTGAGGAAATTACTGAGTTACTTGAATTGTGA 816 0.3517 MGLKKGPWTQEEDRILINHINTYGHSNWRALPKQAGLLRCGKSCRLRWANYLKPDIKRGNFTKEEEDAIINLHQMLGNRWSTIAARLPGRTDNEIKNVWHTHLKKRLPQNQQGHNNSPKRNKKQTNLDFEASKSDQDIKQEQNNVDDMPQCSSDMSYHNNSSNSIATTNDNNNNLDMFINNDKDDVDSAENNLALDEDFWSEVLSSDNSSNETSDGFMDIGADNYQFQASFSPLGTEEGVFDSSSLSLCQDMDFWHDVYARAEEITELLEL 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03858 271 FunFam MYB-related transcription factor 4 57 - -
Trre14g03858 271 SUPERFAMILY Homeodomain-like 1 99 IPR009057 -
Trre14g03858 271 FunFam Transcription factor MYB15 59 136 - -
Trre14g03858 271 MobiDBLite consensus disorder prediction 143 172 - -
Trre14g03858 271 CDD SANT 60 103 IPR001005 -
Trre14g03858 271 Pfam Myb-like DNA-binding domain 5 52 IPR001005 -
Trre14g03858 271 Pfam Myb-like DNA-binding domain 58 103 IPR001005 -
Trre14g03858 271 ProSiteProfiles Myb-like domain profile. 53 103 IPR001005 -
Trre14g03858 271 MobiDBLite consensus disorder prediction 121 142 - -
Trre14g03858 271 CDD SANT 7 52 IPR001005 -
Trre14g03858 271 ProSiteProfiles Myb-like domain profile. 1 52 IPR001005 -
Trre14g03858 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 52 IPR017930 -
Trre14g03858 271 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 213 - -
Trre14g03858 271 MobiDBLite consensus disorder prediction 105 120 - -
Trre14g03858 271 Gene3D - 2 58 - -
Trre14g03858 271 MobiDBLite consensus disorder prediction 105 172 - -
Trre14g03858 271 Gene3D - 59 145 - -
Trre14g03858 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 53 107 IPR017930 -
Trre14g03858 271 SMART sant 57 105 IPR001005 -
Trre14g03858 271 SMART sant 4 54 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03858 Trre-Chr14 47320388 47321566 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03858 1 271 MYB Transcription Factor Family AT2G31180 47.500 7.04e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre14g03858 Myb_DNA-binding 2.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03858 K09422 - gmx:100775603 345.51