Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03857 ATGGTGAGAGCTCCATGTTGTGAAAAAATGGGGTTGAAGAAAGGTCCATGGACTCAAGAAGAAGATAGAATTCTCATCAATCACATAAACACTTATGGCCATTCTAATTGGCGTGCTCTTCCAAAACAAGCTGGGTTGTTAAGGTGTGGAAAAAGTTGTAGATTGAGATGGGCAAATTATTTGAAACCAGATATCAAACGGGGTAATTTTACTAAAGAAGAAGAGGATGCAATAATCAATTTGCACCAAATGTTGGGAAATAGGTGGTCAACTATAGCAGCAAGATTACCAGGACGAACAGACAATGAAATAAAAAATGTATGGCACACCCACTTGAAGAAGAGGCTGCCACAAAACCAACAAGGCCACAACAATAGCCCAAAAAGAAATAAGAAACAAACCAATTTGGACTTTGAAGCCTCCAAATCAGACCAAGATATCAAACAAGAACAAAATAATGTTGATGATATGCCACAATGTTCTAGTGACATGTCATACCATAATAATAGTAGCAATAGCATTGCTACTACTAATGATAATAATAATAATCTTGACATGTTCATAAATAATGATAAAGATGATGTTGATTCAGCAGAAAATAATCTTGCATTGGATGAAGATTTTTGGTCTGAAGTTTTGTCATCTGATAATTCTAGCAATGAGACAAGTGATGGTTTTATGGATATTGGTGCTGATAATTATCAATTTCAAGCTTCATTTTCTCCATTAGGGACTGAAGAAGGAGTGTTTGATTCAAGTTCATTGAGTTTATGCCAAGATATGGACTTTTGGCATGATGTTTATGCAAGAGCTGAGGAAATTACTGAGTTACTTGAATTGTGA 843 0.3535 MVRAPCCEKMGLKKGPWTQEEDRILINHINTYGHSNWRALPKQAGLLRCGKSCRLRWANYLKPDIKRGNFTKEEEDAIINLHQMLGNRWSTIAARLPGRTDNEIKNVWHTHLKKRLPQNQQGHNNSPKRNKKQTNLDFEASKSDQDIKQEQNNVDDMPQCSSDMSYHNNSSNSIATTNDNNNNLDMFINNDKDDVDSAENNLALDEDFWSEVLSSDNSSNETSDGFMDIGADNYQFQASFSPLGTEEGVFDSSSLSLCQDMDFWHDVYARAEEITELLEL 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03857 280 Gene3D - 68 154 - -
Trre14g03857 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre14g03857 280 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre14g03857 280 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre14g03857 280 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre14g03857 280 CDD SANT 69 112 IPR001005 -
Trre14g03857 280 CDD SANT 16 61 IPR001005 -
Trre14g03857 280 MobiDBLite consensus disorder prediction 130 151 - -
Trre14g03857 280 SMART sant 66 114 IPR001005 -
Trre14g03857 280 SMART sant 13 63 IPR001005 -
Trre14g03857 280 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Trre14g03857 280 Gene3D - 11 67 - -
Trre14g03857 280 MobiDBLite consensus disorder prediction 114 181 - -
Trre14g03857 280 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 222 - -
Trre14g03857 280 FunFam Transcription factor MYB15 68 145 - -
Trre14g03857 280 MobiDBLite consensus disorder prediction 114 129 - -
Trre14g03857 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre14g03857 280 FunFam MYB-related transcription factor 13 66 - -
Trre14g03857 280 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre14g03857 280 MobiDBLite consensus disorder prediction 152 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03857 Trre-Chr14 47320361 47321566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03857 1 280 MYB Transcription Factor Family AT2G31180 48.789 2.53e-81 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre14g03857 Myb_DNA-binding 2.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03857 K09422 - gmx:100775603 363.229