Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03852 ATGAATTTTGATTCTCCTCTCTTCCAAAACCAAGATCAAAACCTTCTATGCTTCCCTCAAAATTCCTTCTCTAATTTCTCTTGGGAATTAGAAGATTTCGTTAATTTCTTCAATGATGAGATCAACTTCAACAACGAGTCACATTCACAAACCAAAGAATCATTATCATTATCATTATCATTATCATCGGCCGAATCCAACTCTTCTGGATCCGTACTAAGCAATGAATTACTAGAAGTCTCGTCGAATACAACTTATACTACACAAGTCAAAGAGACACAAATATCGTCATCATCATCTCCACCACCGCCGATTAAGGAAAGTAACAAAAGGGCATTTAGAGGAGTAAGAAGTAGGCCATGGGGGAAATTCGCGGCCGAGATAAGAGACTCAACAAGAAAAGGAGTTAGAGTATGGATTGGAACATTCGACACAGCCGAAGCAGCTGCTTTAGCTTATGATCAAGCAGCTTATTCAACAAGAGGTTCATTAGCAGTGTTAAATTTTCCCGAGGAAGTTGTTAGAGAATCACTTAAAGACATGGCTAGAAATTGTAAGCCTTTGGAAGAAGGTACTTCACCTGTATTGGCACTTAAGAGAAAACACATCATGAGAAAAAAGTCCAATAAGGTTAGTAAAAATAAGAAAATCAAAAGTGATTATCATAGTGATCAACAAATTCAGATTCAAGTAGAGACCAAAACCAATAGTACTAATTCCCAAAATGTGTTTGAGTTTGAGGATTTGGGTGCTGAATATCTGGAACAACTATTGAGCTTGACTTATTAG 789 0.3688 MNFDSPLFQNQDQNLLCFPQNSFSNFSWELEDFVNFFNDEINFNNESHSQTKESLSLSLSLSSAESNSSGSVLSNELLEVSSNTTYTTQVKETQISSSSSPPPPIKESNKRAFRGVRSRPWGKFAAEIRDSTRKGVRVWIGTFDTAEAAALAYDQAAYSTRGSLAVLNFPEEVVRESLKDMARNCKPLEEGTSPVLALKRKHIMRKKSNKVSKNKKIKSDYHSDQQIQIQVETKTNSTNSQNVFEFEDLGAEYLEQLLSLTY 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03852 262 MobiDBLite consensus disorder prediction 89 105 - -
Trre14g03852 262 Gene3D AP2/ERF domain 112 172 IPR036955 GO:0003700|GO:0006355
Trre14g03852 262 SUPERFAMILY DNA-binding domain 113 171 IPR016177 GO:0003677
Trre14g03852 262 ProSiteProfiles AP2/ERF domain profile. 112 170 IPR001471 GO:0003700|GO:0006355
Trre14g03852 262 SMART rav1_2 112 176 IPR001471 GO:0003700|GO:0006355
Trre14g03852 262 FunFam Ethylene-responsive transcription factor 2 111 171 - -
Trre14g03852 262 MobiDBLite consensus disorder prediction 89 112 - -
Trre14g03852 262 CDD AP2 113 171 IPR001471 GO:0003700|GO:0006355
Trre14g03852 262 Pfam AP2 domain 113 162 IPR001471 GO:0003700|GO:0006355
Trre14g03852 262 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Trre14g03852 262 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
Trre14g03852 262 PANTHER DNA-BINDING DOMAIN 63 258 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03852 Trre-Chr14 47244120 47244908 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03852 110 258 AP2-EREBP Transcription Factor Family AT2G31230 56.604 7.61e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre14g03852 AP2 6.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03852 K14516 - gmx:100779524 221.476