Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre14g03850 | ATGGAGGGAGATAGAAATAATAATGTAGAGGTAAGATATAGAGGAATTCGTAGAAGACCATGGGGTAAATTTGCAGCTGAAATTCGTGATCCAACAAGAAAAGGTTCTCGTATTTGGCTTGGAACATTTGATACAGCTGAACAAGCTGCACGTGCTTATGATGCTGCTGCTTTTCATTTTCGTGGTCATAAAGCTATTCTTAATTTTCCAAATGACTTTGCTCATTCTAGTACTAATTATAATGTTTCAAATACTACTTCAACAACCTTAAATAATACATTGTCTAATTCTTCTTTCATAAATTCCCATCAACAACAACAAGGTCAAGGTGATGATACTTTTGATGAATTGGCTTGCTTTGATAATAAGTTGTTGGAAGAACTTCTTGATGATCAGGTGCAAGATGATGGTACAGGTAGCTCTAGAAATTGA | 432 | 0.3495 | MEGDRNNNVEVRYRGIRRRPWGKFAAEIRDPTRKGSRIWLGTFDTAEQAARAYDAAAFHFRGHKAILNFPNDFAHSSTNYNVSNTTSTTLNNTLSNSSFINSHQQQQGQGDDTFDELACFDNKLLEELLDDQVQDDGTGSSRN | 143 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre14g03850 | 143 | Gene3D | AP2/ERF domain | 11 | 71 | IPR036955 | GO:0003700|GO:0006355 | |
Trre14g03850 | 143 | Pfam | AP2 domain | 12 | 63 | IPR001471 | GO:0003700|GO:0006355 | |
Trre14g03850 | 143 | PRINTS | Ethylene responsive element binding protein signature | 13 | 24 | IPR001471 | GO:0003700|GO:0006355 | |
Trre14g03850 | 143 | PRINTS | Ethylene responsive element binding protein signature | 36 | 52 | IPR001471 | GO:0003700|GO:0006355 | |
Trre14g03850 | 143 | SUPERFAMILY | DNA-binding domain | 12 | 71 | IPR016177 | GO:0003677 | |
Trre14g03850 | 143 | FunFam | Ethylene-responsive transcription factor 2 | 11 | 71 | - | - | |
Trre14g03850 | 143 | CDD | AP2 | 12 | 72 | IPR001471 | GO:0003700|GO:0006355 | |
Trre14g03850 | 143 | SMART | rav1_2 | 12 | 76 | IPR001471 | GO:0003700|GO:0006355 | |
Trre14g03850 | 143 | PANTHER | DNA-BINDING DOMAIN | 11 | 113 | IPR044808 | GO:0003700|GO:0009873 | |
Trre14g03850 | 143 | Coils | Coil | 143 | 143 | - | - | |
Trre14g03850 | 143 | ProSiteProfiles | AP2/ERF domain profile. | 12 | 70 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre14g03850 | Trre-Chr14 | 47221498 | 47221929 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre14g03850 | 10 | 132 | AP2-EREBP Transcription Factor Family | AT3G23230 | 52.033 | 3.64e-39 | 127 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2/ERF-ERF | Trre14g03850 | AP2 | 1.3e-14 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre14g03850 | - | - | gmx:100778998 | 149.058 |