Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03850 ATGGAGGGAGATAGAAATAATAATGTAGAGGTAAGATATAGAGGAATTCGTAGAAGACCATGGGGTAAATTTGCAGCTGAAATTCGTGATCCAACAAGAAAAGGTTCTCGTATTTGGCTTGGAACATTTGATACAGCTGAACAAGCTGCACGTGCTTATGATGCTGCTGCTTTTCATTTTCGTGGTCATAAAGCTATTCTTAATTTTCCAAATGACTTTGCTCATTCTAGTACTAATTATAATGTTTCAAATACTACTTCAACAACCTTAAATAATACATTGTCTAATTCTTCTTTCATAAATTCCCATCAACAACAACAAGGTCAAGGTGATGATACTTTTGATGAATTGGCTTGCTTTGATAATAAGTTGTTGGAAGAACTTCTTGATGATCAGGTGCAAGATGATGGTACAGGTAGCTCTAGAAATTGA 432 0.3495 MEGDRNNNVEVRYRGIRRRPWGKFAAEIRDPTRKGSRIWLGTFDTAEQAARAYDAAAFHFRGHKAILNFPNDFAHSSTNYNVSNTTSTTLNNTLSNSSFINSHQQQQGQGDDTFDELACFDNKLLEELLDDQVQDDGTGSSRN 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03850 143 Gene3D AP2/ERF domain 11 71 IPR036955 GO:0003700|GO:0006355
Trre14g03850 143 Pfam AP2 domain 12 63 IPR001471 GO:0003700|GO:0006355
Trre14g03850 143 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Trre14g03850 143 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Trre14g03850 143 SUPERFAMILY DNA-binding domain 12 71 IPR016177 GO:0003677
Trre14g03850 143 FunFam Ethylene-responsive transcription factor 2 11 71 - -
Trre14g03850 143 CDD AP2 12 72 IPR001471 GO:0003700|GO:0006355
Trre14g03850 143 SMART rav1_2 12 76 IPR001471 GO:0003700|GO:0006355
Trre14g03850 143 PANTHER DNA-BINDING DOMAIN 11 113 IPR044808 GO:0003700|GO:0009873
Trre14g03850 143 Coils Coil 143 143 - -
Trre14g03850 143 ProSiteProfiles AP2/ERF domain profile. 12 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03850 Trre-Chr14 47221498 47221929 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03850 10 132 AP2-EREBP Transcription Factor Family AT3G23230 52.033 3.64e-39 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre14g03850 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03850 - - gmx:100778998 149.058