Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03849 ATGGATTTTTACTCTTCCGTTGATTTATTTGATATTTCATGGGAAGACATGTTTTTCTTCAACAACATCGACTCTGATTCTTCATCCTCTAGTGGTGAAACGGATTTACAAGAACCCACATACAATATTACATACAATGGGCACGTCAAAGAAGAAAATCCACCACCACCACCGATATCAATTGCTCCAAAAACCCTAAATCAACAACCGAAACCATTTAAACGAGAGAAGAGGCTCTATAGAGGAGTGAGGACACGGCCATGGGGAAAATATGCAGCAGAGATAAGGGACACAACAAGAAATGGTGTTCGTGTGTGGATCGGAACATTTGACACGCCTGAAGCAGCCGCTTTGGCTTATGACCAAGCAGCTTTCTTAACACGAGGATGTAGGGCAATCCTTAATTTCTCGGAACATGTTGTGAAAGAGTCTCTTCAAAACATGAATTTGAAGACATTGTTAAATCACGGTAGCTCACCCTTGTTGGAACTTAAAAGAATGCATGTCTTGAGAACAAGATCAAAGACTTGCACTAAAAAGGTTAAAAGGGATTCCAAGAATGGAGTGATGAAAAATGCTCAAAATGTGTTGGTGTTGGAAGATATGGGTTCTGAATATCTAGAGCAACTTTTGATGAGTTCTATTTGA 648 0.3966 MDFYSSVDLFDISWEDMFFFNNIDSDSSSSSGETDLQEPTYNITYNGHVKEENPPPPPISIAPKTLNQQPKPFKREKRLYRGVRTRPWGKYAAEIRDTTRNGVRVWIGTFDTPEAAALAYDQAAFLTRGCRAILNFSEHVVKESLQNMNLKTLLNHGSSPLLELKRMHVLRTRSKTCTKKVKRDSKNGVMKNAQNVLVLEDMGSEYLEQLLMSSI 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03849 215 PANTHER DNA-BINDING DOMAIN 54 211 IPR044808 GO:0003700|GO:0009873
Trre14g03849 215 SUPERFAMILY DNA-binding domain 79 138 IPR016177 GO:0003677
Trre14g03849 215 CDD AP2 80 139 IPR001471 GO:0003700|GO:0006355
Trre14g03849 215 Pfam AP2 domain 80 125 IPR001471 GO:0003700|GO:0006355
Trre14g03849 215 Gene3D AP2/ERF domain 79 139 IPR036955 GO:0003700|GO:0006355
Trre14g03849 215 PRINTS Ethylene responsive element binding protein signature 103 119 IPR001471 GO:0003700|GO:0006355
Trre14g03849 215 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Trre14g03849 215 FunFam Ethylene-responsive transcription factor 2 78 138 - -
Trre14g03849 215 SMART rav1_2 79 143 IPR001471 GO:0003700|GO:0006355
Trre14g03849 215 ProSiteProfiles AP2/ERF domain profile. 79 137 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03849 Trre-Chr14 47207736 47208383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03849 74 214 AP2-EREBP Transcription Factor Family AT3G23240 53.191 5.93e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre14g03849 AP2 2.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03849 K14516 - gmx:100818907 181.8