Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03837 ATGGCTTCTGAAGATCCCACCGTCGCCGTCGAAGAAACCGCCGCCGTCGAAGAAACTGCCGCCGTCGACACTTTACCTCCCGTCGTCAATGAGTCTGACGAGCCTGCCGCTGATGCTACCGCCGCCGCCGCCGCCGCCGCCAAGCCTAAGAAGGCCGCCAAGGAGCCTAAGCCTAGGAAGCCTGCTGCTCCTCGCACTCATCCTCCTTACGAAGAGATGGTGAAGGACGCGATTGTTACTTTGAAGGAGAAAAATGGTTCGAGTCAGTATGCGATTGCGAAGTTCATTGAAGAGAAGCATAATCAGCTTCCATCGAACTTCAAGAAGATTTTGCTTGTTCAGATCAAGAAGCTTGTTGCTTCTGATAAGCTTGTTAAGGTTAAAGGATCTTACAAGTTACCTCCTAAGTCATCATCTGGTTCTAAACCAGCTGCTGCTAAGAAGCCTGCTGCTGCTAAACCCAAGCCCAAGCCCAAGGCTAAGCCTGCTTCTAAGCCCAAGCCTGCTGCTCCTGTTAGTACTAAGAAAGGTAAACCTGCTGCTGCTAAGAAAGCTAAGCCAGCTGCTAAAGCTAAGCCGGCTGCTGCTAAACGTAAGCCTGTTGCTGCTGTGATGAATGCACCACCTGTTCCGGCATTGACTAAGCGCAAGGCTAGGCCTGCTCCTAAGGCGAAGCCTGCTCCCGCTAAGGCGAAGCCGGCTCCGGCTAAGGCGAAGCCTGCTCCCGCTAAGGCGAAACCGGCTCCTGCTAAGGCTAAGCCTGCTGCGGCGAAGAAGCCGGCTGCCAGACCGGCGAAGGCTTCTCGGACTTCAACCAGGACATCTCCTGGGAGAAGAGCTGCTGCGCCAAAGCCTGCTGTGGCTAAGAAGGTGGCAACACCGGTGAAGAAGGCGGCTCCAGCGAAGAAGGCAGCTCCGGTGAAGAAGGCTGCAGCGAAATTGCCAGCTAAGAAGGCACCTGCTAAGAGAGGGGGTAGAAAGTGA 984 0.5488 MASEDPTVAVEETAAVEETAAVDTLPPVVNESDEPAADATAAAAAAAKPKKAAKEPKPRKPAAPRTHPPYEEMVKDAIVTLKEKNGSSQYAIAKFIEEKHNQLPSNFKKILLVQIKKLVASDKLVKVKGSYKLPPKSSSGSKPAAAKKPAAAKPKPKPKAKPASKPKPAAPVSTKKGKPAAAKKAKPAAKAKPAAAKRKPVAAVMNAPPVPALTKRKARPAPKAKPAPAKAKPAPAKAKPAPAKAKPAPAKAKPAAAKKPAARPAKASRTSTRTSPGRRAAAPKPAVAKKVATPVKKAAPAKKAAPVKKAAAKLPAKKAPAKRGGRK 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03837 327 SUPERFAMILY "Winged helix" DNA-binding domain 64 147 IPR036390 -
Trre14g03837 327 MobiDBLite consensus disorder prediction 126 327 - -
Trre14g03837 327 Gene3D - 62 149 IPR036388 -
Trre14g03837 327 PRINTS Histone H5 signature 80 97 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre14g03837 327 PRINTS Histone H5 signature 155 169 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre14g03837 327 PRINTS Histone H5 signature 53 74 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre14g03837 327 PRINTS Histone H5 signature 219 238 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre14g03837 327 CDD H15 64 140 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre14g03837 327 FunFam Histone H1 61 146 - -
Trre14g03837 327 Pfam linker histone H1 and H5 family 67 133 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre14g03837 327 SMART h15plus2 64 130 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre14g03837 327 MobiDBLite consensus disorder prediction 1 75 - -
Trre14g03837 327 PANTHER HISTONE H1 41 304 - -
Trre14g03837 327 MobiDBLite consensus disorder prediction 179 193 - -
Trre14g03837 327 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 66 135 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre14g03837 327 MobiDBLite consensus disorder prediction 50 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03837 Trre-Chr14 47099574 47100692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03837 31 157 Single Myb Histone (SMH) Gene Family AT1G49950 32.331 3.67e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03837 K11275 - tpra:123889087 177.178