Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03836 ATGCTTCCTATTCCCACTGATTCTCCGGCACCGTCCAAGCATTTCAGAGGAGTTCGTAAGCGTCCATGGGGCCGTTTCGCCGCCGAGATCAGAGATCCATGGAAAAAAACTCGCAAGTGGCTCGGCACCTTTGACACCGCCGAAGAAGCCGCAAGAGCTTACGACGACGCTGCTAGAGCTCTCCGTGGACCAAAAGCGAAGACTAACTTCGCCTACTTTGTCGCTCCTACTATTCTTCCACTTCCTCAGCCTCATGACGGTAGTAATGGAAGACCTGTCGAGTTTTGGGGTCCGCCGGTTTATTTCACCGCCGGTGCTCCGGTGAGGTCGGAGTATAAGGGTTATAAGTTGGAGAATATTGTGGTGAGTAAGGAAGAGGTGGAAGAGAAGAAGCCGTTTTTGTTTGATCTTAACTTGCCGGCGCCGCTTGTTTGA 435 0.5195 MLPIPTDSPAPSKHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDDAARALRGPKAKTNFAYFVAPTILPLPQPHDGSNGRPVEFWGPPVYFTAGAPVRSEYKGYKLENIVVSKEEVEEKKPFLFDLNLPAPLV 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03836 144 ProSiteProfiles AP2/ERF domain profile. 14 71 IPR001471 GO:0003700|GO:0006355
Trre14g03836 144 FunFam Ethylene-responsive transcription factor 2 13 72 - -
Trre14g03836 144 Pfam AP2 domain 14 63 IPR001471 GO:0003700|GO:0006355
Trre14g03836 144 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Trre14g03836 144 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Trre14g03836 144 SMART rav1_2 14 77 IPR001471 GO:0003700|GO:0006355
Trre14g03836 144 Gene3D AP2/ERF domain 13 72 IPR036955 GO:0003700|GO:0006355
Trre14g03836 144 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 89 - -
Trre14g03836 144 CDD AP2 13 72 IPR001471 GO:0003700|GO:0006355
Trre14g03836 144 SUPERFAMILY DNA-binding domain 14 72 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03836 Trre-Chr14 47075970 47076404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03836 14 70 AP2-EREBP Transcription Factor Family AT1G50640 89.474 4.99e-30 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre14g03836 AP2 1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03836 K09286 - gmx:100816599 186.808