Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03832 ATGTCGAATGAAGTTGCAAAAGTTAATAGAAAAACGATTGCAGCATGCATGACTTGCCCACTTTGTAACAACTTCTTCAAACAAGCTACAACTATATCTGAATGTCTTCACACGTTTTGCAGGAAGTGCATTTATGATAAGATTACTGATGAAGATTTGGAATGTTGTCCAGTATGCAACATTGATTTGGGCTGTGTTCCACTTGAGAAACTAAAGCCGGACCACAGTAAACTAAACATAAGGTACATTGTTTTCCCTTCAAAGCGAAGAGAGGTGAAAGAACCTGAAGTTGTCGCCGCTTCAGTAGAGTCGGTACCAGTACCAGCTAAAAGAAAAGAGAGATCTCTTTCATCCTTGGTGGTCAACACACCAAGAGTATCTGCACAATCAACGAAGACAGGAAGAAGAACGAAACCTACAAGAAAAGCTAGCAGTCTGCGGTCCTCTAGTTTTTCCATTGAAAAGTCAGTTAAACAAGAGGAAGAATTATTGGACAACCGTCCCAAGAGTTCAAGCTCGCCTGAAACTTCAAATGAGTTGCGTCAAAATAATGGACAGAGTGAGGGTAGTCAATCCACACCTAATATAGAAGCGGAGAACGGTGCCGAATCATGGGATGCAAAGATGGATCTTTGGAAGCCTTTGAATGATTTAGTAGAGATCGCAAGCAGGACTAAGTCTTTCAAGTCTAATACGCAGCGATCTGATGCCAAACCAGAACATGTTCAAGTAAACGAGAGTGACTCTCAAGTGCAGAAAATCAAAAATAAGGAAAATAAACGCAAGGCAAAAGTTGAGGATGAAAAAAGTAGCCCTTTTCCAGTTTGTTCTGATACAGCAAAACCAAATAAATTGCGTAGAGTACGCAGGAAAAAGGAACCATTTGGAGAATCAGGCGTATCTCCCCAAGCTGTGGTGGATTCTACCAGCAATAAACACTTGAAGAGTGGTCCAATTTGGTTCTCCTTAATAGCTTCTGAAAACCAGGAAGGAGAAGCACCCTTACCAAATATTCCTGCAATCTATTTGAGAATAAAGGATGGAAGTGCACCTGTCTCGTGTATCCAAAAATACCTAATGCAGAAACTCAATCTGACCAATGAAACAGAGATTGAGATTAAGTGTATGGGTCAACCAGTGCTCCCTACACTGAAACTACACAATTTGGTTGAGTTGTGGCTGGATTCAGCAGCATCTGCATCCGACCGAATTCCAGCAATTATCGGGTCGTCAGCAAAGGATTTTGTCATGGTTCTTGCTTATTCTCAGAAGGCTCCGCACCCTTGA 1287 0.4157 MSNEVAKVNRKTIAACMTCPLCNNFFKQATTISECLHTFCRKCIYDKITDEDLECCPVCNIDLGCVPLEKLKPDHSKLNIRYIVFPSKRREVKEPEVVAASVESVPVPAKRKERSLSSLVVNTPRVSAQSTKTGRRTKPTRKASSLRSSSFSIEKSVKQEEELLDNRPKSSSSPETSNELRQNNGQSEGSQSTPNIEAENGAESWDAKMDLWKPLNDLVEIASRTKSFKSNTQRSDAKPEHVQVNESDSQVQKIKNKENKRKAKVEDEKSSPFPVCSDTAKPNKLRRVRRKKEPFGESGVSPQAVVDSTSNKHLKSGPIWFSLIASENQEGEAPLPNIPAIYLRIKDGSAPVSCIQKYLMQKLNLTNETEIEIKCMGQPVLPTLKLHNLVELWLDSAASASDRIPAIIGSSAKDFVMVLAYSQKAPHP 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03832 428 MobiDBLite consensus disorder prediction 154 168 - -
Trre14g03832 428 MobiDBLite consensus disorder prediction 169 197 - -
Trre14g03832 428 SUPERFAMILY RING/U-box 15 64 - -
Trre14g03832 428 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Trre14g03832 428 MobiDBLite consensus disorder prediction 228 280 - -
Trre14g03832 428 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Trre14g03832 428 MobiDBLite consensus disorder prediction 251 271 - -
Trre14g03832 428 MobiDBLite consensus disorder prediction 116 134 - -
Trre14g03832 428 MobiDBLite consensus disorder prediction 289 308 - -
Trre14g03832 428 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Trre14g03832 428 SMART ring_2 19 59 IPR001841 -
Trre14g03832 428 CDD RING-HC_PCGF 17 60 - -
Trre14g03832 428 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 424 IPR044807 GO:0004842
Trre14g03832 428 MobiDBLite consensus disorder prediction 113 197 - -
Trre14g03832 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 117 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03832 Trre-Chr14 47046045 47050751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03832 5 346 C3H Transcription Factor Family AT2G30580 48.991 1.06e-98 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03832 K16277 - gmx:100815540 619.772