Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre14g03832 | ATGTCGAATGAAGTTGCAAAAGTTAATAGAAAAACGATTGCAGCATGCATGACTTGCCCACTTTGTAACAACTTCTTCAAACAAGCTACAACTATATCTGAATGTCTTCACACGTTTTGCAGGAAGTGCATTTATGATAAGATTACTGATGAAGATTTGGAATGTTGTCCAGTATGCAACATTGATTTGGGCTGTGTTCCACTTGAGAAACTAAAGCCGGACCACAGTAAACTAAACATAAGGTACATTGTTTTCCCTTCAAAGCGAAGAGAGGTGAAAGAACCTGAAGTTGTCGCCGCTTCAGTAGAGTCGGTACCAGTACCAGCTAAAAGAAAAGAGAGATCTCTTTCATCCTTGGTGGTCAACACACCAAGAGTATCTGCACAATCAACGAAGACAGGAAGAAGAACGAAACCTACAAGAAAAGCTAGCAGTCTGCGGTCCTCTAGTTTTTCCATTGAAAAGTCAGTTAAACAAGAGGAAGAATTATTGGACAACCGTCCCAAGAGTTCAAGCTCGCCTGAAACTTCAAATGAGTTGCGTCAAAATAATGGACAGAGTGAGGGTAGTCAATCCACACCTAATATAGAAGCGGAGAACGGTGCCGAATCATGGGATGCAAAGATGGATCTTTGGAAGCCTTTGAATGATTTAGTAGAGATCGCAAGCAGGACTAAGTCTTTCAAGTCTAATACGCAGCGATCTGATGCCAAACCAGAACATGTTCAAGTAAACGAGAGTGACTCTCAAGTGCAGAAAATCAAAAATAAGGAAAATAAACGCAAGGCAAAAGTTGAGGATGAAAAAAGTAGCCCTTTTCCAGTTTGTTCTGATACAGCAAAACCAAATAAATTGCGTAGAGTACGCAGGAAAAAGGAACCATTTGGAGAATCAGGCGTATCTCCCCAAGCTGTGGTGGATTCTACCAGCAATAAACACTTGAAGAGTGGTCCAATTTGGTTCTCCTTAATAGCTTCTGAAAACCAGGAAGGAGAAGCACCCTTACCAAATATTCCTGCAATCTATTTGAGAATAAAGGATGGAAGTGCACCTGTCTCGTGTATCCAAAAATACCTAATGCAGAAACTCAATCTGACCAATGAAACAGAGATTGAGATTAAGTGTATGGGTCAACCAGTGCTCCCTACACTGAAACTACACAATTTGGTTGAGTTGTGGCTGGATTCAGCAGCATCTGCATCCGACCGAATTCCAGCAATTATCGGGTCGTCAGCAAAGGATTTTGTCATGGTTCTTGCTTATTCTCAGAAGGCTCCGCACCCTTGA | 1287 | 0.4157 | MSNEVAKVNRKTIAACMTCPLCNNFFKQATTISECLHTFCRKCIYDKITDEDLECCPVCNIDLGCVPLEKLKPDHSKLNIRYIVFPSKRREVKEPEVVAASVESVPVPAKRKERSLSSLVVNTPRVSAQSTKTGRRTKPTRKASSLRSSSFSIEKSVKQEEELLDNRPKSSSSPETSNELRQNNGQSEGSQSTPNIEAENGAESWDAKMDLWKPLNDLVEIASRTKSFKSNTQRSDAKPEHVQVNESDSQVQKIKNKENKRKAKVEDEKSSPFPVCSDTAKPNKLRRVRRKKEPFGESGVSPQAVVDSTSNKHLKSGPIWFSLIASENQEGEAPLPNIPAIYLRIKDGSAPVSCIQKYLMQKLNLTNETEIEIKCMGQPVLPTLKLHNLVELWLDSAASASDRIPAIIGSSAKDFVMVLAYSQKAPHP | 428 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre14g03832 | 428 | MobiDBLite | consensus disorder prediction | 154 | 168 | - | - | |
Trre14g03832 | 428 | MobiDBLite | consensus disorder prediction | 169 | 197 | - | - | |
Trre14g03832 | 428 | SUPERFAMILY | RING/U-box | 15 | 64 | - | - | |
Trre14g03832 | 428 | ProSiteProfiles | Zinc finger RING-type profile. | 19 | 60 | IPR001841 | - | |
Trre14g03832 | 428 | MobiDBLite | consensus disorder prediction | 228 | 280 | - | - | |
Trre14g03832 | 428 | ProSitePatterns | Zinc finger RING-type signature. | 35 | 44 | IPR017907 | - | |
Trre14g03832 | 428 | MobiDBLite | consensus disorder prediction | 251 | 271 | - | - | |
Trre14g03832 | 428 | MobiDBLite | consensus disorder prediction | 116 | 134 | - | - | |
Trre14g03832 | 428 | MobiDBLite | consensus disorder prediction | 289 | 308 | - | - | |
Trre14g03832 | 428 | Pfam | Zinc finger, C3HC4 type (RING finger) | 19 | 59 | - | - | |
Trre14g03832 | 428 | SMART | ring_2 | 19 | 59 | IPR001841 | - | |
Trre14g03832 | 428 | CDD | RING-HC_PCGF | 17 | 60 | - | - | |
Trre14g03832 | 428 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE DRIP1 | 1 | 424 | IPR044807 | GO:0004842 | |
Trre14g03832 | 428 | MobiDBLite | consensus disorder prediction | 113 | 197 | - | - | |
Trre14g03832 | 428 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 117 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre14g03832 | Trre-Chr14 | 47046045 | 47050751 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre14g03832 | 5 | 346 | C3H Transcription Factor Family | AT2G30580 | 48.991 | 1.06e-98 | 296 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre14g03832 | K16277 | - | gmx:100815540 | 619.772 |