Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03818 ATGGAAGTTATTGTTGGCATGAAGAAGGAGAAAATGGGATTTGAGGAAACTGAGCTAAGACTTGGAATTGGATCAACCAAAGGTAGTGAAGAAGTTGTAAGGAAGAGAGGATTTTCTGAGACTGAAAGTCATGATGATGAGAACACTACTATGAATTTGATGCTTAATCTTTCATCTAAGGAAGCTAGTGGTGAGGTAGATCCAAGTGATAAGATCAAGAAGAATTTGCAAAAGGAGAAGACTCTTTTGCCTGATCCTGCCAAGCCTCCTACAAAGACTCAAGTTGTGGGTTGGCCACCTGTCCGGTCATACCGGAAGAACATGTTAGCAATGCAAAAGAGTACTAATAATGTTGGAGATCATGAAAGTGAGAAGAACAATATTGCAATTAGCTTTGTGAAAGTTAGCATGGATGGAGCACCTTATCTCCGCAAAGTCGACTTAAAAATGTACAAAAGTTACTCACAACTTTCTGATTCCTTAGGCAAAATGTTTAGCTCCTTCACCATTGGCAACTGTGAATCACAAGGAATGAAGGATTTCATGAATGAGAGTAAGTTGATGGATCTCTTAAACAATTCTGACTATGTCCCAACTTATGAAGACAAGGATGGTGACTGGATGCTTGTCGGTGACGTCCCATGGGAGATGTTTGTTGGATCATGCAAACGTTTACGTATCATGAAAGGAAAGGAGGCTATTGGTATTGCACCAAGAGCCATGGAGAAGTGCAAGAACAGAAGCTAG 747 0.4043 MEVIVGMKKEKMGFEETELRLGIGSTKGSEEVVRKRGFSETESHDDENTTMNLMLNLSSKEASGEVDPSDKIKKNLQKEKTLLPDPAKPPTKTQVVGWPPVRSYRKNMLAMQKSTNNVGDHESEKNNIAISFVKVSMDGAPYLRKVDLKMYKSYSQLSDSLGKMFSSFTIGNCESQGMKDFMNESKLMDLLNNSDYVPTYEDKDGDWMLVGDVPWEMFVGSCKRLRIMKGKEAIGIAPRAMEKCKNRS 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03818 248 FunFam Auxin-responsive protein 125 240 - -
Trre14g03818 248 Gene3D - 124 241 - -
Trre14g03818 248 Pfam AUX/IAA family 16 239 IPR033389 -
Trre14g03818 248 MobiDBLite consensus disorder prediction 25 50 - -
Trre14g03818 248 SUPERFAMILY CAD & PB1 domains 132 229 - -
Trre14g03818 248 MobiDBLite consensus disorder prediction 29 47 - -
Trre14g03818 248 ProSiteProfiles PB1 domain profile. 130 230 IPR000270 GO:0005515
Trre14g03818 248 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 234 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03818 Trre-Chr14 46911877 46919666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03818 122 233 B3 DNA Binding Superfamily AT3G61830 33.036 5.40e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre14g03818 AUX_IAA 1.2e-82 CL0072