Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03810 ATGGGAAGCTATATTGAAACAGAGTTGATTATTAATCACAAGGACACAGAATTAAGGTTAGGATTACCTGGAAGTGAAGATGAACAACAATCATGTAATGGTTCTATTGTTAGAAGCAACAAGAGATCTTTTTCATCAGAAACAACAAGTGTGGAACAAGAATCTATTTGTAAGAGCAACAATGTTAGCTCAGATACTTCTAATTCTTCAACCACAAGTAATGATCATGATCATGACCAAGACACTGTCCAACCTAAAAAGGTACAAGTAGTAGGGTGGCCACCAATTAGATCTTTTAGGAAGAGCAGTTTACAACAAAAGAAAGTGGAAGATGGATGTGGAATGTATGTGAAAGTGAGTATGGCTGGTGCACCTTATTTGAGGAAGATAGATCTCAAAGTATACAAAAGCTATTCAGAACTTCTTATAGCTTTGGAAAATTTGTTCAAGTGCACATTTGGTGAATATTCAGAAAGAGAAGGGTATAATGGATCTGAATGTGCTCCTACTTATGAAGATAAGGATGGTGATTGGATGCTAGTTGGAGATGTTCCATGGAACATGTTCATATCTTCTTGTAAGAGGCTAAAGATAGTGAAAGGATCAGAAGCAAAGGGTTTGGCATGTTTATGA 633 0.3633 MGSYIETELIINHKDTELRLGLPGSEDEQQSCNGSIVRSNKRSFSSETTSVEQESICKSNNVSSDTSNSSTTSNDHDHDQDTVQPKKVQVVGWPPIRSFRKSSLQQKKVEDGCGMYVKVSMAGAPYLRKIDLKVYKSYSELLIALENLFKCTFGEYSEREGYNGSECAPTYEDKDGDWMLVGDVPWNMFISSCKRLKIVKGSEAKGLACL 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03810 210 MobiDBLite consensus disorder prediction 26 71 - -
Trre14g03810 210 Pfam AUX/IAA family 16 208 IPR033389 -
Trre14g03810 210 FunFam Auxin-responsive protein 109 210 - -
Trre14g03810 210 ProSiteProfiles PB1 domain profile. 114 206 IPR000270 GO:0005515
Trre14g03810 210 Gene3D - 109 210 - -
Trre14g03810 210 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 205 IPR003311 GO:0005634|GO:0006355
Trre14g03810 210 MobiDBLite consensus disorder prediction 21 86 - -
Trre14g03810 210 SUPERFAMILY CAD & PB1 domains 109 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03810 Trre-Chr14 46874475 46875534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03810 103 207 B3 DNA Binding Superfamily AT2G46530 35.238 3.92e-12 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre14g03810 AUX_IAA 8.2e-57 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03810 K14484 - gmx:100792134 280.796