Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03809 ATGGCAAATAACAACCCTTCCGACGCTCCCGCCGCCGATGACTTTCTCGAACAAATCCTCAGTCTTCAGACCTTCGCTTCCGCCGATTCTGGATTAACTGGACCCGACGTTGGCCTTACCGGAACTTCTCCGATGATGCTTCAGCTTAACTCCTCCGACGCCAACCATCACCTCGCCGCCGGAAGTTCCTTTCATGCGCCGGTGTATCACCAGTTAGGTTTGAGCTTGGACCAAGGTAAAGGAGGAGGATTCTTGAAGCCTGAGGAAGCTTCTGGTAGTGGTGAACGCTTTCGCAACGACGTCGTTCATGGTAGACCTAATAATGTTTTTCACGGACAACCCATGCATACTAATGTTCCTGCTGCACCACATCCTCCAGCCATGCGTCCTAGGGTGCGGGCAAGAAGAGGACAGGCTACAGATCCACACAGCATAGCTGAGAGATTACGCAGAGAAAGAATAGCAGAAAGAATCAGGGCGCTGCAGGATTTGGTTCCAAGTGTTAACAAGACAGATAGAGCTGCCATGTTAGATGAAATTGTGGATTACGTCAAGTTCTTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTCGATTGGGCGGAGCAGGTGCAGTGGCACCACTGGTAACTGACATCCCATTATCATCAGTCGAGGAAGAAGGCAGTGAAGGTGGAAGAAACCGACCGGCTTGGGACAAGTGGTCTAATGATGGCACAGAAAAACAGGTAGCTAAGCTTATGGAAGAAAATGTTGGAGCTGCCATGCAACTGCTTCAATCAAAGGCACTTTGCATCATGCCAATCTCCCTGGCATCGGCGATATACCAGTCACAGCCACCAGATAGCCCTAGTATAGTCAAGCCTGAAACCAATCCTCCCTCATAG 885 0.4994 MANNNPSDAPAADDFLEQILSLQTFASADSGLTGPDVGLTGTSPMMLQLNSSDANHHLAAGSSFHAPVYHQLGLSLDQGKGGGFLKPEEASGSGERFRNDVVHGRPNNVFHGQPMHTNVPAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQDLVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNRPAWDKWSNDGTEKQVAKLMEENVGAAMQLLQSKALCIMPISLASAIYQSQPPDSPSIVKPETNPPS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03809 294 MobiDBLite consensus disorder prediction 115 142 - -
Trre14g03809 294 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 197 IPR036638 GO:0046983
Trre14g03809 294 Gene3D - 133 195 IPR036638 GO:0046983
Trre14g03809 294 FunFam Basic helix-loop-helix transcription factor 133 195 - -
Trre14g03809 294 SMART finulus 144 193 IPR011598 GO:0046983
Trre14g03809 294 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 57 273 - -
Trre14g03809 294 Pfam Helix-loop-helix DNA-binding domain 143 187 IPR011598 GO:0046983
Trre14g03809 294 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 187 IPR011598 GO:0046983
Trre14g03809 294 MobiDBLite consensus disorder prediction 275 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03809 Trre-Chr14 46857603 46860743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03809 64 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 78.390 1.94e-116 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre14g03809 HLH 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03809 - - gmx:100797789 450.284