Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03793 ATGTCTAACAATCATAATCTACAATATGATGGTACTTCATTTATCATTGACATAACAAGTACCCTTAACAAAGTCACTTCTAAATACACCAACAATGCAAAAAGAAGGTGGCGTTTTGCTTATACAGCTATTTATTCTAGAAGGGTTATGCTTTCCCTTGCAAAAGAGGTCATATCTAGAAAAAATACAAAACTCTTTCATACAGAATCTTCTTCTAGTTCCAATACCACTCTTGATATAATTGAACCACTAATTACACAACATAATTATGGAACCAAAACCAAAACCAATCATTATTGTTTGGTTTCTGATTTTGTTGATAAAACAAAACTTGCTGATATGGTTAAGGACAAAAACTTGAAGTCCTTGACTGAGTTTGGTGGAGTTGAAGGTATTGGACATGTTCTTGGAACAGTTCATGACAAAGGAATCATTGGAAGTGACGACGATATTTCGAGGCGGCTCGAGTTATTCGGTTCAAATACTTACAAAAAACCACCACCAAAAGGTCTTTTACATTTTGTACTTGAAGCTTTCAATGATACAACTATTATCATTCTTCTTGTTTGTGCTGGTCTTTCCCTTGGTTTTGGCATAAAAGAACATGGTGCAGGGGAAGGTTGGTATGAAGGTGGAAGTATATTTCTTGCAGTTTTTCTTGTTGTTGTTGTAAGTGCATTAAGCAATTTCAGACAAGAAAGACAATTTCATAAATTGTCTAAGATAAGTAACAATATCAAAGTTGAAGTTGTTCGAAATGGAAGGCCACAAAAGATATCAATTTTTGATGTTCTTGTGGGAGATATTGTTTCTCTCAAAATTGGTGATCAAATTCCTGCTGATGGAGTTTTTTTGTCAGGTCATTCACTTCAAGTGGATGAATCTAGCATGACAGGTGAGAGCGATCATGTAGAGATCGAGCATTTAAGAGCGCCTTTTTTGTTGTCCGGCGCGAAAGTTGTCGACGGATATGCTCAAATGCTTGTGACATCTGTGGGAAAAAACACATCATGGGGTCAAATGATGAGTTCAATATCGCGAGACACTAACGAAAGAACCCCGTTACAAGCGCGACTTGACAAGTTAACCTCTTCGATCGGAAAGGTTGGACTTGCGGTAGCGTTTCTTGTTCTTTTAGTGTTGTTGATTCGTTATTTTACCGGTAACTCGCAAGAAGATAAAGGGCATAAGAAGTTTCGAGGAAGCAAAACCGATATAAACGATGTTTTAAATTCTGTTGTGAGTATTGTTGCGGCTGCGGTCACTATTGTGGTTGTGGCTATCCCTGAGGGTTTGCCATTGGCTGTGACACTCACACTTGCTTACTCCATGAAAAGAATGATGGGAGATAATGCTATGGTGAGGAAACTTTCTGCTTGTGAAACTATGGGATCAGCAACAGTTATCTGCACTGATAAAACTGGTACCTTGACATTAAATCAAATGAGGGTCACCAAGTTTTGTCTTGGCATCGAAAACTTTACGGAAACATTTTCCAATGCAATGGCTCCAGAAGTTCTTGAACTGTTCCACCAAGGGGTAGGCCTTAATACAACAGGTAGTGTCTATAATCCTCCATCAGGATCCGAACCTGAAATTTCGGGTAGTCCAACGGAGAAAGCTATACTCTTGTGGGCTGTATCGGAATTAGGTATGAACATGGATGAAATGAAACAGAAACATAAAGTTCTTCATGTTGAAACATTTACCTCGGAGAAGAAACGAAGTGGCGTTGCGATAAAGAAGGAGAACGACAACAGAGTTCATGTGCATTGGAAAGGAGCTGCAGAGATGATACTAGCAATGTGTACAAGCTATATTGATAGTAACGGAGCGAGGAAATCTCTTGTTGATGAAGAACGGAGCAAAATTGAGACGATAATCCAAGGTATGGCTGCTAGTAGTCTAAGATGTATTGCTTTTGCTCACATGGAGATTTCAGATTCAGAAGGTAATGATTATATGATCACAAGGGAGAAAAAATCACATCAAATCCTAAGGGAAGATGGATTGACCTTGCTTGGCATTGTTGGCCTCAAGGATCCATGCAGACCAAACACAAAGAAAGCTGTGGAAACTTGCAAAGCTGCAGGAGTTGAAATTAAGATGATCACCGGCGATAACATATTCACCGCAAAGGCAATAGCAATGGAATGTGGAATATTAGATCCTAAAAATGCCAATGCAAATGCTGGAGAAGTTGTAGAAGGTGTGGAATTCAGAAACTATACAGAAGAAGAGAGAATGGAGAAAGTCGATAAGATCCTAGTAATGGCAAGATCATCCCCTATGGACAAACTTTTGATGGTTCAATGCTTAAGAAAGAAAGGACATGTAGTTGCAGTCACGGGCGATGGCACGAACGATGCACCTGCATTAAAAGAAGCTGATATAGGACTTTCTATGGGAATCCAAGGAACCGAAGTTGCAAAAGAAAGTTCTGATATCGTTATCTTAGACGATAACTTCAATTCGGTTGCAACTGTTTTAAGATGGGGAAGATGTGTTTACAACAACATTCAGAAATTTATTCAGTTTCAACTAACAGTCAATGTTGCAGCACTTGTGATAAACTTTATTGCAGCAGTTTCCTCCGGCGATGTTCCTTTAACAACAGTTCAACTTCTTTGGGTGAATCTCATTATGGATACATTAGGTGCTTTGGCATTAGCAACAGAAAGACCTACAAAAGAGTTAATGAAGAAAAAGCCGATCGGTAGAACCGAACCTCTTATCACAAACATTATGTGGAGAAACCTTTTAGCTCAAGCTTCATATCAAATTGCAGTTCTTCTGATTATGCAGTTTTATGGAAAATCAATCTTCAATGTAAGTAAAGAGTTGTTTCATGGCCACTTGCTTGCATAG 2868 0.3867 MSNNHNLQYDGTSFIIDITSTLNKVTSKYTNNAKRRWRFAYTAIYSRRVMLSLAKEVISRKNTKLFHTESSSSSNTTLDIIEPLITQHNYGTKTKTNHYCLVSDFVDKTKLADMVKDKNLKSLTEFGGVEGIGHVLGTVHDKGIIGSDDDISRRLELFGSNTYKKPPPKGLLHFVLEAFNDTTIIILLVCAGLSLGFGIKEHGAGEGWYEGGSIFLAVFLVVVVSALSNFRQERQFHKLSKISNNIKVEVVRNGRPQKISIFDVLVGDIVSLKIGDQIPADGVFLSGHSLQVDESSMTGESDHVEIEHLRAPFLLSGAKVVDGYAQMLVTSVGKNTSWGQMMSSISRDTNERTPLQARLDKLTSSIGKVGLAVAFLVLLVLLIRYFTGNSQEDKGHKKFRGSKTDINDVLNSVVSIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMGDNAMVRKLSACETMGSATVICTDKTGTLTLNQMRVTKFCLGIENFTETFSNAMAPEVLELFHQGVGLNTTGSVYNPPSGSEPEISGSPTEKAILLWAVSELGMNMDEMKQKHKVLHVETFTSEKKRSGVAIKKENDNRVHVHWKGAAEMILAMCTSYIDSNGARKSLVDEERSKIETIIQGMAASSLRCIAFAHMEISDSEGNDYMITREKKSHQILREDGLTLLGIVGLKDPCRPNTKKAVETCKAAGVEIKMITGDNIFTAKAIAMECGILDPKNANANAGEVVEGVEFRNYTEEERMEKVDKILVMARSSPMDKLLMVQCLRKKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFNSVATVLRWGRCVYNNIQKFIQFQLTVNVAALVINFIAAVSSGDVPLTTVQLLWVNLIMDTLGALALATERPTKELMKKKPIGRTEPLITNIMWRNLLAQASYQIAVLLIMQFYGKSIFNVSKELFHGHLLA 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03793 955 NCBIfam calcium-translocating P-type ATPase, PMCA-type 104 944 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Trre14g03793 955 FunFam Calcium-transporting ATPase 800 953 - -
Trre14g03793 955 Gene3D - 147 346 - -
Trre14g03793 955 FunFam Calcium-transporting ATPase 222 346 - -
Trre14g03793 955 SUPERFAMILY Calcium ATPase, transmembrane domain M 127 944 IPR023298 -
Trre14g03793 955 PRINTS P-type cation-transporting ATPase superfamily signature 293 307 - -
Trre14g03793 955 PRINTS P-type cation-transporting ATPase superfamily signature 783 802 - -
Trre14g03793 955 PRINTS P-type cation-transporting ATPase superfamily signature 470 484 - -
Trre14g03793 955 PRINTS P-type cation-transporting ATPase superfamily signature 697 707 - -
Trre14g03793 955 PRINTS P-type cation-transporting ATPase superfamily signature 675 686 - -
Trre14g03793 955 PRINTS P-type cation-transporting ATPase superfamily signature 807 819 - -
Trre14g03793 955 ProSitePatterns E1-E2 ATPases phosphorylation site. 472 478 IPR018303 -
Trre14g03793 955 PANTHER CATION TRANSPORTING ATPASE 104 946 - -
Trre14g03793 955 SUPERFAMILY Calcium ATPase, transduction domain A 245 344 IPR008250 -
Trre14g03793 955 Pfam haloacid dehalogenase-like hydrolase 468 797 - -
Trre14g03793 955 SUPERFAMILY HAD-like 468 888 IPR036412 -
Trre14g03793 955 Pfam Cation transporting ATPase, C-terminus 868 947 IPR006068 -
Trre14g03793 955 SFLD p-type atpase 452 836 IPR044492 -
Trre14g03793 955 FunFam Calcium-transporting ATPase 480 682 - -
Trre14g03793 955 Gene3D - 177 935 - -
Trre14g03793 955 Gene3D - 467 828 IPR023214 -
Trre14g03793 955 SFLD Haloacid Dehalogenase 452 836 - -
Trre14g03793 955 CDD P-type_ATPase_Ca_PMCA-like 151 916 - -
Trre14g03793 955 Pfam Cation transporter/ATPase, N-terminus 128 194 IPR004014 -
Trre14g03793 955 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 476 686 IPR023299 GO:0000166
Trre14g03793 955 Gene3D - 480 682 IPR023299 GO:0000166
Trre14g03793 955 PRINTS Sodium/potassium-transporting ATPase signature 214 234 - -
Trre14g03793 955 PRINTS Sodium/potassium-transporting ATPase signature 463 484 - -
Trre14g03793 955 PRINTS Sodium/potassium-transporting ATPase signature 590 608 - -
Trre14g03793 955 Pfam E1-E2 ATPase 246 448 - -
Trre14g03793 955 SMART Cation_ATPase_N_a_2 125 199 IPR004014 -
Trre14g03793 955 FunFam Calcium-transporting ATPase 677 828 - -
Trre14g03793 955 NCBIfam HAD-IC family P-type ATPase 412 492 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre14g03793 955 NCBIfam HAD-IC family P-type ATPase 214 387 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre14g03793 955 NCBIfam HAD-IC family P-type ATPase 757 863 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03793 Trre-Chr14 46590717 46593819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03793 33 948 Primary Pumps ATPases AT3G63380 70.197 0.0 1215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03793 K01537 - gmx:100790034 1433.31