Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03787 ATGAACTATTTGTACCCGGTGAAAGAAGAGTATTTGGAAATCGAATCAACATCGTTGGGGGCGTCGAGATATGAAAGAGGAAGTGATGAGGGATCAATGGCTGTTATTCCACGGCCAATGGAGGGACTTCATGAAGTAGGACCACCACCATTTCTAACAAAGACATATGATGTTGTGGAGGACCCCACAACAAGTCACATAGTTTCATGGAACAGAGATGGTGCTAGCTTTGTTGTTTGGGATCCAAATGCTTTCTCAAGAGATCTTCTTCCTAGATACTTCAAACACAACAATTTCTCAAGTTTTGTTAGACAACTCAACACTTATGGTTTTAGAAAAATTGATCCTGATAAATGGGAGTTTGCAAATGAAGGATTTTTGAGAGGACATAAAAATCTTTTGTCAAACATTAAGAGAAGGAGACAAAGTTCATCACAACCTAGTACTTCACAAACGCATTCACAAGGTCATTGTGTTGAAGTTGGTCGTTTTGAAGAAATTGATCATTTGAGACGTGACAAACAAGTTTTAATGATGGAACTTGTGAAGCTTAGACAGCAACAACAGAACACAAGATCTTTACTTCAATCAATGGAGGAAAGGTTACGTGGAACCGAAATTAAGCAGCAACAAATGATGGCTTTTTTAGCTAGAGCTATGAAGAATCCAGCTTTTATTCAGCAATTACTTCAACATAAGGAAAAGAGAAAAGAGATTGAAGAAGCTATTACTAAGAAGAGGAGAAGACCAATTGAGTATGGAGAATCAAGCAATAATAATGATGTTAAATATGGATTTGAAGTGTCTGAGTTGGAGGTTCTTGCTATGGAAATGCAGGGTCTTGGAAGAGGTAAGAGAGAACATGAGGAAGAGATTGAGGTTTTTGAGACTAATGAGAAATTGAATAAAGAACTTGATGAAGAGTTTTGGGAAGAACTTTTTAGTGAGAAATTTGAGAATGAATTAGATATTCTAATATCTCAAGGAGATTATTATGATGATGATGATGTTGATGGTGAAGATCATTTCGATGTGTTGGTTAATCGCTTTGGTTACTTGGGTTCAAGTCCTAAATGA 1077 0.3668 MNYLYPVKEEYLEIESTSLGASRYERGSDEGSMAVIPRPMEGLHEVGPPPFLTKTYDVVEDPTTSHIVSWNRDGASFVVWDPNAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDKWEFANEGFLRGHKNLLSNIKRRRQSSSQPSTSQTHSQGHCVEVGRFEEIDHLRRDKQVLMMELVKLRQQQQNTRSLLQSMEERLRGTEIKQQQMMAFLARAMKNPAFIQQLLQHKEKRKEIEEAITKKRRRPIEYGESSNNNDVKYGFEVSELEVLAMEMQGLGRGKREHEEEIEVFETNEKLNKELDEEFWEELFSEKFENELDILISQGDYYDDDDVDGEDHFDVLVNRFGYLGSSPK 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03787 358 Gene3D - 44 141 IPR036388 -
Trre14g03787 358 FunFam Heat shock transcription factor 1 44 141 - -
Trre14g03787 358 PRINTS Heat shock factor (HSF) domain signature 89 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre14g03787 358 PRINTS Heat shock factor (HSF) domain signature 51 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre14g03787 358 PRINTS Heat shock factor (HSF) domain signature 102 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre14g03787 358 Pfam HSF-type DNA-binding 51 140 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre14g03787 358 SMART hsfneu3 47 140 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre14g03787 358 Coils Coil 167 201 - -
Trre14g03787 358 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 37 259 IPR027725 -
Trre14g03787 358 SUPERFAMILY "Winged helix" DNA-binding domain 47 140 IPR036390 -
Trre14g03787 358 ProSitePatterns HSF-type DNA-binding domain signature. 90 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre14g03787 358 Coils Coil 229 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03787 Trre-Chr14 46540036 46542014 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03787 37 356 HSF AT3G22830 52.575 7.93e-118 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre14g03787 HSF_DNA-bind 1.5e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03787 K09419 - gmx:100794264 494.582