Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre14g03778 | ATGGAGCAGTATGAAATTCTAGAACAGGTCGGTAAAGGTGCATTTGGTTCTGCTATGCTTGTGAGGCATAAGCATGAAAAGAAAAAGTATGTCCTCAAGAAGATCCGTCTTGCTCGCCAAACTGACAGAACCCGTAGGTCGGCCCATCAGGAGATGGAGCTTATATCTAAAGTTCGCAACCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGTTTTGTATGCATCATCATCGCCTATTGTGAAGGAGGAGATATGGCTGAAGCTATAAAAAAGGCCAATAGTGTTAACTTTTCTGAAGAGAAACTCTGCAAGTGGCTCGTCCAGTTGCTGATGGCACTTGATTACTTACATGTAAATCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTGACTTTGGTCTCGCTAAAATGTTGACATCTGACGATCTTGCTTCCTCAATTGTTGGGACTCCAAGTTATATGTGCCCTGAGCTTCTTGCGGATATACCCTATGGCTCTAAATCAGATATCTGGTCTTTGGGATGCTGTGTTTATGAAATGGCTGCTCACAGGCCAGCTTTTAAAGCTTTTGACATACAAGCATTGATTCACAAAATAAACAAGTCAATAGTAGCTCCACTGCCAACTATGTACTCTAGTGCTTTCCGGGGGCTTGTTAAAACTATGCTGCGGAAAAATCCAGAGCTAAGGCCAACTGCAGGAGAGTTACTAAATCATCCACATCTTCAGCCTTACATTCTTAAAGTTCACCAAAAACTAAATTGCCCCAGAAGAAGTACTTTTCCATTCCAATGGCCTGAATCAAACTATGGAAGAAGAACTCGATTTGTGGAGCCGGAATCTGTTTCTACTCTTTCTGACCAAGACAGATACTTGTCACCAAACAATCACAGGGCGTTGAATCCCAGTATTTCTGGAACTGAACAAAGTTCTCAATATTCTACTCAAAGAGCTCAAGAATTATCCAATTGTTCAGAAGAGAATGGCTTATCTGCTGGTGTTGTCCGTGGCCACTGCAATACTAACAAATCAAAAGCCATAAAGTCCTCAACTGGGGAAAGAACACCAAGACTTAGAGTAGCTAAGGAATCTGCTTCTGCCAGAAGGCAGACAACAGCACCGCCAAAGATATATGTTGCTGGTTCAAAGCGTGAATCACTTCCGGTTCCCCGCGCACCATCGGCTAAGTCTACCATGCCGACCCGGAGAGCATCCCTTCCAATTCCTACAAGAGGCAAGAACACAAGAAACTTCTACAACGACGTTGGTTATGTGGATTCTCCTGATGTTTCTGTTGATGCACCACAAATTGACAGGATTGCAGAATTCGCAATGGCTTCCTACGAGGATCCATTCTTTCATGTTATTCGAAGACCATCATCAGCATCAGCCAAATGCATTTCTAGTGCAGCAGGAAGTGCTGATTGCACAATCACAAAGGACAAGTGTACAATCCTGGTGGACAAAAAAGTTACTGTCCCCACTAGCACCGCTGAAGCTGGTACTGGTGTTCCATTTACAAAAGGCAGTGCCAGTGAATGCTCTAACTATGTTACAACTGGCGTTTCAAGCCGCTCCTCATCTGAGTCGCGCGAGCATCGGTTTGACACCTCGTCATACCAGCAACGTGCTGATGCGTTGGAGGGGCTGCTGGAGTTCAGTGCCAGGCTGCTACAACAACATAGGTTTGATGAGCTTGGTGTACTGTTGAAGCCATTTGGGCCTGAGAAGGTTTCTCCAAGGGAAACAGCTATTTGGTTGGCCAAGAGCTTTAAACAAAACGGTGATATAAGGTTTCCTCATACACTTGCGTGA | 1863 | 0.4375 | MEQYEILEQVGKGAFGSAMLVRHKHEKKKYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIIIAYCEGGDMAEAIKKANSVNFSEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSIVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHRPAFKAFDIQALIHKINKSIVAPLPTMYSSAFRGLVKTMLRKNPELRPTAGELLNHPHLQPYILKVHQKLNCPRRSTFPFQWPESNYGRRTRFVEPESVSTLSDQDRYLSPNNHRALNPSISGTEQSSQYSTQRAQELSNCSEENGLSAGVVRGHCNTNKSKAIKSSTGERTPRLRVAKESASARRQTTAPPKIYVAGSKRESLPVPRAPSAKSTMPTRRASLPIPTRGKNTRNFYNDVGYVDSPDVSVDAPQIDRIAEFAMASYEDPFFHVIRRPSSASAKCISSAAGSADCTITKDKCTILVDKKVTVPTSTAEAGTGVPFTKGSASECSNYVTTGVSSRSSSESREHRFDTSSYQQRADALEGLLEFSARLLQQHRFDELGVLLKPFGPEKVSPRETAIWLAKSFKQNGDIRFPHTLA | 620 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre14g03778 | 620 | SMART | serkin_6 | 4 | 258 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre14g03778 | 620 | Pfam | Protein kinase domain | 4 | 257 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre14g03778 | 620 | Gene3D | Transferase(Phosphotransferase) domain 1 | 79 | 275 | - | - | |
Trre14g03778 | 620 | ProSitePatterns | Protein kinases ATP-binding region signature. | 10 | 33 | IPR017441 | GO:0005524 | |
Trre14g03778 | 620 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 78 | - | - | |
Trre14g03778 | 620 | MobiDBLite | consensus disorder prediction | 366 | 380 | - | - | |
Trre14g03778 | 620 | MobiDBLite | consensus disorder prediction | 414 | 428 | - | - | |
Trre14g03778 | 620 | FunFam | Serine/threonine-protein kinase Nek3 | 86 | 332 | - | - | |
Trre14g03778 | 620 | SUPERFAMILY | Protein kinase-like (PK-like) | 1 | 331 | IPR011009 | - | |
Trre14g03778 | 620 | FunFam | Serine/threonine-protein kinase Nek2 | 1 | 83 | - | - | |
Trre14g03778 | 620 | MobiDBLite | consensus disorder prediction | 360 | 428 | - | - | |
Trre14g03778 | 620 | MobiDBLite | consensus disorder prediction | 301 | 335 | - | - | |
Trre14g03778 | 620 | CDD | STKc_Nek | 3 | 258 | - | - | |
Trre14g03778 | 620 | PANTHER | SERINE/THREONINE-PROTEIN KINASE NEK | 1 | 568 | - | - | |
Trre14g03778 | 620 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 125 | 137 | IPR008271 | GO:0004672|GO:0006468 | |
Trre14g03778 | 620 | ProSiteProfiles | Protein kinase domain profile. | 4 | 258 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre14g03778 | Trre-Chr14 | 46459074 | 46464432 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre14g03778 | 10 | 259 | MAP Kinase Kinase Kinase | AT1G53570 | 31.765 | 2.10e-38 | 147 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | NEK | Trre14g03778 | Pkinase | 9.9e-64 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre14g03778 | K08857 | - | gmx:100810347 | 859.751 |