Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03740 ATGGATTTATCATCTGAGAGTGAGGACGACCTACATGATGATGCATGTGCTCTTTGTGGAGGAGTAGGAGAAATAATTTGTTGCGGTAGTTGTCCTTCAGTTTTTCATCAAAATTGTTTAACTATAAAAGAGCTTCCACCAGATGATATTGATGATGATGATGAATATGAATGGCATTGCTTTTGGTGCTGTTGTAAATTTTGCGGACTATTTGAAGAAAGTTCAAAACAAAATACTACAAATAAACCCAATTCTGAATACGTGATACTCTCTTATCATAAAACATGTGTTGATGCCAATAATGATGAGACCGTTCATTTCAATCGTGCATTTATATGTGGAAAAAGATGTCAAGAGGTATTTGAGAGGCTTGAAATACTTCTTGGAGAAAAACATCAAATTGAAGATGATTATTGTTGCAATTTTTTGCGTAAATCACATGTTACCAGCTCAAGTGATTCAAAATTGGATGTTGTATTAACAATAATGTATGAATCCTTTGAACCATCATTTATCTATCATAAAGACCAGACCATTGAGACCATCCCTAGTATCCTATTTAGCCGTTGGACAAATTCTCCTTTTACAAACTTTGATGGATTTTTCACTGTAATTCTAGAGAAAGGAGATGAGATAATTAGTGTTGCAACTATCAGGATTCATGGAAATCAAATGGCAGAGATGCCATATATTGCAACACGCCCTAAGTATAGAAATCAAGGAATGTGTCGTCGACTACTTAATGCCATTGAATCGGCACTAAGTTATCTAAATGTTGAGATGTTGGTTATGCCATCTGAACCTGAAGTAGCACATACTTGGATTTCTTGTTTTGGATTTGAGCCCCTTGACTTGGCCATGGAAAATTTCATGAAGTACGAAAAAGTGGTACCATTTTTTGGTGTACAAATGCTACAGAAGAAGATATCAAATTATACACCTTCTGGTGAAAATGTGAATTTTATTGAAGCTTTCAATTTTCACAAGAATCGAAAAGTGAACGAAGAAAAAAAACTTCTCACCAAGTCGCGTGTTAATGCTGAAGTTGGTCATGAGATTATTACCAAGAAAAGTTGCGGTGAAAGCTCTTCGCGCCGTAGACCATGA 1107 0.355 MDLSSESEDDLHDDACALCGGVGEIICCGSCPSVFHQNCLTIKELPPDDIDDDDEYEWHCFWCCCKFCGLFEESSKQNTTNKPNSEYVILSYHKTCVDANNDETVHFNRAFICGKRCQEVFERLEILLGEKHQIEDDYCCNFLRKSHVTSSSDSKLDVVLTIMYESFEPSFIYHKDQTIETIPSILFSRWTNSPFTNFDGFFTVILEKGDEIISVATIRIHGNQMAEMPYIATRPKYRNQGMCRRLLNAIESALSYLNVEMLVMPSEPEVAHTWISCFGFEPLDLAMENFMKYEKVVPFFGVQMLQKKISNYTPSGENVNFIEAFNFHKNRKVNEEKKLLTKSRVNAEVGHEIITKKSCGESSSRRRP 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03740 368 ProSitePatterns Zinc finger PHD-type signature. 16 63 IPR019786 -
Trre14g03740 368 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 146 309 IPR000182 GO:0016747
Trre14g03740 368 SUPERFAMILY FYVE/PHD zinc finger 2 69 IPR011011 -
Trre14g03740 368 SMART PHD_3 15 64 IPR001965 -
Trre14g03740 368 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 158 288 IPR016181 -
Trre14g03740 368 Pfam Acetyltransferase (GNAT) family 164 254 IPR000182 GO:0016747
Trre14g03740 368 Gene3D - 145 296 - -
Trre14g03740 368 ProSiteProfiles Zinc finger PHD-type profile. 13 66 IPR019787 -
Trre14g03740 368 CDD NAT_SF 204 263 - -
Trre14g03740 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 90 IPR013083 -
Trre14g03740 368 PANTHER PHD FINGER PROTEIN 12 10 320 IPR042163 GO:0003714|GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03740 Trre-Chr14 46063830 46069604 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03740 15 309 PHD Transcription Factor Family AT1G05380 39.809 3.72e-67 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03740 - - psat:127129048 372.089