Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03710 ATGGATCTTCGCACGCGTAATATGAAGAGAAAACTCGAATTCACTGAACAAGATGATGAACATACTACCAATCCTCATCGTCGTCGTCTAGATCTTCACGCCGATATTTCCAAACGGATTCATTTCCTCAACTCTGCTTTTTCACCGTCCGATTCAGATTGTTGCTCTGCGAGAAGTGCTGTATTCGTTCTCACCGAGTTTGCTAAAGACGAAGATATTGTGGATGTTATAGTGGATTGTGGTGCTGTTCCTGCTTTGGTGAAGGTTCTGGAGACGGCGAATACGGTGGTGATTGGTGACGGTGATTGTCATGTCGATCGTCACCTGTATGAAATGGAGAAAGACTGTGCGTTCGTCCTTGGTCTACTTGCTGTCAAGTCAGAGTATCAACAACTTATTGTTGATGCTGGAGCCTTGCCCCATCTCGTGGGATTGTTAAAGAGATCCAAAAGCCCTATCATTTCTCAAGCACTTTTTTCGGGTCTTCTTAGAAAAACAGCTGACACAATAACCAACCTTGCCCATGAAAATACCAGCATCAAGACCCTTGTCAGGGTGGAAGGTGGTATCCCTCCTCTTGTTGAATTGCTTGAATTCAATGATACAAAGGTACAGAGAGCAGCTGCAGGGGCATTGCGAACTCTTGCATTTCAAAATGCGGACAATAAAAATCAGATTGTTCAATGCAATGCGTTGCCCACTCTTGTACTGATGCTTGGATCAGAGGATCCTACAATACATTACGAGGCTGTTGGTGTGATCGGAAATCTGGTCCACTCTTCGCCTGAAATTAAGAAAGAGGTTCTTCTAGCCGGGGCTTTACAGCCAGTTATTTGCTTATTAAGTTCCTGCTGTTTGGAGAGCCGACGAGAAGCAGCTCTTTTAATTGGTCAGTTTGCTACAACGGATTCAGATTGCAAGATTCACATTGGCCAAAGAGGGGCTATAAACCCCTTAATTGAAATGCTTGAGTCTTCAGATTTACAGCTTAGGGAAATGTCAACTTTTGCACTTGGGAGGTTGGCCCAGGATTCTCACAATCAAGCTGGTATTGCTTACAATGGAGGTATAGAGCCTCTGCTCAAGCTTCTCGGCACAAAGAATGCTTCTTCTGTCCAACACAATGCATCTTTTGCTCTTTATGCTCTCGCCGATAATGAGGACAATGTTGCAGTTATTATTAAGGCCGGTGGTTTTCAAAAACTGCAGCAGGGACATTTCAATGCTCAGCCCACTCAAGAGTGTGTAACAAAGACGTTAAAAAGATTGGAAGAGAAGATGCAAGGGCGAGTACTGAAACACATGCTGTATCTTATGCGCACTGGGGAAAAGGGTGTTCGAATACGTGTAGTTCTTGCTCTTGCACATTTATGTTCCTCTGATGATCGTAAAACTATTTTCATTGACAATAATGGATTAGAATTGCTGTTGGAGCTTCTTCAATCCACAAACCAAAAGCAGAAGGGTGAAGCTTCAGTAGCGCTTCACGCAATGGCTGCCAAAGGAATGCGTGCCTCTATTCGTAATCCTGCTCCTACATCACCAACTCCCCAGGTTTACTTGGGTGAGGAATATGTAAACAATCCTAAACTTTCTGATGTCACATTCATAGTTGAAGGAAAAAGATTTCATGCTCATAGGTCTTGTTTACTTTCTTCTGATATATTTCGTGCAATGTTTGATGGAGGTTATAGGGAAAAGGAAGCCAAAGATATAGAGATTCCAAATATTAAATGGAATGTCTTTGAGTTGATGATGAGATTTATATACACTGGAACAGTGGATGTTGATTTGGATGTTGCTGTGGACCTCCTTAAAGCTGCAGATCAATATCTTCTTGACGGTCTTAAGCGTATTTGTGAATATACCATTTCTAAGGGTATTTCTGTGGAAAATGTTTCACTACTGTACGCGATGTCAGAGACTTTCAATGCTACATCATTAAGAGATTCATGCATACTCTTTGTCCTGAATCAATTTGATAGCTTGAGTTCCAAACCATGGTATTCTCACTTTATTCGTTGCATTGTGCCAGACATTCACAAATTCTTCTCAACTTTACTTACCACTAAATTTGGTCTTGTGGATCCTTAG 2094 0.4193 MDLRTRNMKRKLEFTEQDDEHTTNPHRRRLDLHADISKRIHFLNSAFSPSDSDCCSARSAVFVLTEFAKDEDIVDVIVDCGAVPALVKVLETANTVVIGDGDCHVDRHLYEMEKDCAFVLGLLAVKSEYQQLIVDAGALPHLVGLLKRSKSPIISQALFSGLLRKTADTITNLAHENTSIKTLVRVEGGIPPLVELLEFNDTKVQRAAAGALRTLAFQNADNKNQIVQCNALPTLVLMLGSEDPTIHYEAVGVIGNLVHSSPEIKKEVLLAGALQPVICLLSSCCLESRREAALLIGQFATTDSDCKIHIGQRGAINPLIEMLESSDLQLREMSTFALGRLAQDSHNQAGIAYNGGIEPLLKLLGTKNASSVQHNASFALYALADNEDNVAVIIKAGGFQKLQQGHFNAQPTQECVTKTLKRLEEKMQGRVLKHMLYLMRTGEKGVRIRVVLALAHLCSSDDRKTIFIDNNGLELLLELLQSTNQKQKGEASVALHAMAAKGMRASIRNPAPTSPTPQVYLGEEYVNNPKLSDVTFIVEGKRFHAHRSCLLSSDIFRAMFDGGYREKEAKDIEIPNIKWNVFELMMRFIYTGTVDVDLDVAVDLLKAADQYLLDGLKRICEYTISKGISVENVSLLYAMSETFNATSLRDSCILFVLNQFDSLSSKPWYSHFIRCIVPDIHKFFSTLLTTKFGLVDP 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03710 697 SUPERFAMILY ARM repeat 428 502 IPR016024 -
Trre14g03710 697 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 137 188 IPR000225 GO:0005515
Trre14g03710 697 Gene3D Potassium Channel Kv1.1; Chain A 523 666 IPR011333 -
Trre14g03710 697 SMART BTB_4 532 628 IPR000210 GO:0005515
Trre14g03710 697 Pfam BTB/POZ domain 524 625 IPR000210 GO:0005515
Trre14g03710 697 SUPERFAMILY ARM repeat 43 404 IPR016024 -
Trre14g03710 697 Gene3D - 160 233 IPR011989 -
Trre14g03710 697 SUPERFAMILY POZ domain 523 625 IPR011333 -
Trre14g03710 697 Pfam Armadillo/beta-catenin-like repeat 219 258 IPR000225 GO:0005515
Trre14g03710 697 Pfam Armadillo/beta-catenin-like repeat 182 216 IPR000225 GO:0005515
Trre14g03710 697 ProSiteProfiles BTB domain profile. 532 598 IPR000210 GO:0005515
Trre14g03710 697 SMART arm_5 344 385 IPR000225 GO:0005515
Trre14g03710 697 SMART arm_5 261 301 IPR000225 GO:0005515
Trre14g03710 697 SMART arm_5 70 125 IPR000225 GO:0005515
Trre14g03710 697 SMART arm_5 460 500 IPR000225 GO:0005515
Trre14g03710 697 SMART arm_5 126 175 IPR000225 GO:0005515
Trre14g03710 697 SMART arm_5 303 343 IPR000225 GO:0005515
Trre14g03710 697 SMART arm_5 177 217 IPR000225 GO:0005515
Trre14g03710 697 SMART arm_5 219 259 IPR000225 GO:0005515
Trre14g03710 697 Gene3D - 40 159 IPR011989 -
Trre14g03710 697 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 230 272 IPR000225 GO:0005515
Trre14g03710 697 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 188 223 IPR000225 GO:0005515
Trre14g03710 697 MobiDBLite consensus disorder prediction 1 25 - -
Trre14g03710 697 Gene3D - 234 511 IPR011989 -
Trre14g03710 697 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 690 IPR044282 -
Trre14g03710 697 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 355 398 IPR000225 GO:0005515
Trre14g03710 697 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 314 356 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03710 Trre-Chr14 45822875 45827793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03710 197 473 U-box Gene Family AT3G46510 27.076 1.11e-15 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre14g03710 BTB 1.6e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03710 - - csin:114287792 870.152