Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03692 ATGCAGTTGACTTTCCCTGAAGACACAGTCACACCGCCGCCGGTGCCGTGCCTTGTTCGACCACCACCATTCACCACGCCACCAGTCACCACGCCTCAGTCATCACACAGACAAAGAAAACATCCACTGCCAGCTTTGTATACTATATTCGTACTAGAAGGAGCCATGTCAAGGATATGTGTGAAGAATCTCCCTAAATATGTTGCAGAGGATCGACTAAGAGAATTATTTTCTCAGAAAGGAGAAATAACTGATGTCAAGCTTATGCGTACCAAAAACGGCAAAAGTCGCCAATTTGCTTTTATCGGATTTCGTACAGACCAGGAAGCTCAGGAAGCGATTCGATATTTTAATAGATCTTACCTTGACACGCTTAGAATTACTTGCGAGGTGGCTCAAAAACTCGGTGATGCAAATCTTCCTCGTCCATGGAGTCGACATTCAACGAAAAAAGACACTAAAGTGGTGACCACCCCAGATGCGAATGATCATGCTAGACCTAAAGGAAAAGGAGACAATGCTAAGGACATTGATGACCCAAAGCTTAAAGATTTTCTTCAGGTCATGCAACCTCGGGTTAAGTCTAAGTTGTGGGGAAATGATACTTCATTTGTTGAATCCAATGATAATAATGGTAACAGCCAAGCAACATTGAATAAGGAGATCCAAGGTACATTGGTTGCAAACCATCCTATCTTAAGCAACTCACAAGTAGAAGATGATGGAATACCGCCAAATAATCCTCAATCCGACAAGTCACATGATGGATTAATGTCTGATATGGATTATTTCAAGAGTAAAGTGACAACAGAATGGTCTGATTCTGATAGCAGTGATGATGAAAACAATGATTCGGAATCTGCTGACGAGGATGACAAAGATAACCATAGTCATGCTAGTGAACGTGAAGAAACCCCAAAAAGTGGTGCTCAAGAGTTACAAGTAGTAGAAGGGAAAGAAGATACTTTTCAAGAGGATGCTGCCAATGATAAATCTCAGGTTAATGCAACTGAGGTAGAGGGGTTATCATCAAATCCTGAAGATAAGAAACAAGTTTCTGAGTCGTGTCGACTGTTTGTCCGTAATCTGCCATATACGACCACTGAGGAGGAACTGGAAGAGCATTTCAGTCAGTTTGGTAGTGTCTCACAGGTTCATTTAGTTGTTGATATGGAGACAAAACGATCCAAAGGAATAGCTTATATTCATTTTTCAGTTCCAGAATTTGCAACCAGGGCGCTAGAAGAGTTGGACAATTCAATCTTCCAGGGTAGATTATTGCATGTCATGCCAGCTATATCTAGACATTCAAACAATGAAGAGAACAATGTCTCCAAAGACCAAGGTTCTAAAACTCTCAAACAACGAAGAGAGGAAGAGAGGAAAGCAGCTGAAGCCGGTGGAGATACCAGAGCATGGAATAGTCTGTTCATGCGTCCTGATACAGTTGTTGAAAACGTTGCTCGGAAACATGGTGTTAGTAAGAGTGAGTTTATGGACCGAGAAGCTAATGATCTTGCTGTACGTATTGCTCTGGGAGAAACTCAAGTGATTTCAGAAACAAAAAATGCATTTAAGAAAGCTGGAGTGAATGTGGAGTCTTTGGAGGAGCTTGCCAAGGGTAAAGTTGATGGCGCAAAAAGAAGTAACCATGTAATTTTAGTGAAAAATTTGCCCTATGGTTCTACCGAAAATGAACTCGCAAATATGTTTGGGAAATTTGGTAGTTTGGAAAAAACAATTCTTCCCTCAACAAAAACACTGGCCCTGGTTGTTTTCCTTGAACCAGCAGAAGCTAAAGTTGCTTTTAGAGGTTTAGCTTACAAGCGTTACAAGGATGCTCCCTTATACTTGGAATGGGCTCCTTCCAATATTCTTATCCCAAAATCAACATCTGACGATAATGAGATGAATAGCGGAATTGGTGAAAAGGATGTCAAGCGACAGATATTGGAGCAAGACGTGGAAAGAATATCAGATATGGATATTGATCCAGACAGAATAGAGGCTCGGTCCCTGTTTGTCAAGAACCTAAATTTCAAAACAACTGATGAGAGTTTGAAGGAGCATTTAAGTAAACACATGAAAGAGGGACGGATTTTGAGTGTCAAGGTGAAGAAGCATTTGAAAAATGGGAAAAATGTTTCTATGGGGTTTGGATTTGTTGAGTTTGACTCCACAGAGACCGCTACAAGTGTTTGCAACAATTTACAGGGGACTATTTTGGACAGCCATGCTCTTATTTTACAACTTTGTCATGCAAAGAATGATGGTAAAGTACAAAAGAAAGTTGAGAAAGACAAGAGTTCAACTAAGTTGCTTGTGAGAAATGTTGCTTTTGAGGCAACAGAGAAGGATCTTAGACAATTGTTTAGCCCATTTGGCCAGATTAAAAGCTTAAGGTTGCCAATGAAGTTAGGTAATCATAGAGGATTTGCTTTTGTGGAGTATGTTACTCAGCAGGAGGCACAAAATGCAATTACGGCACTCTCAAGTACTCACTTGTATGGAAGACATCTGGTGATAGAGAGAGCGAAAGAAGGTGAGAGTTTGGAGGAACTGCGGGCTCGAACTGCTGCTCAATTTAATGAACATAGTGGATTTCAAGATGCTAACTTATCCAAGAAAAGGAAGGCCATCCGTATGTTTGATGAAGAAAATATGAAGTTTGGAAGGTTTGATTAG 2685 0.4067 MQLTFPEDTVTPPPVPCLVRPPPFTTPPVTTPQSSHRQRKHPLPALYTIFVLEGAMSRICVKNLPKYVAEDRLRELFSQKGEITDVKLMRTKNGKSRQFAFIGFRTDQEAQEAIRYFNRSYLDTLRITCEVAQKLGDANLPRPWSRHSTKKDTKVVTTPDANDHARPKGKGDNAKDIDDPKLKDFLQVMQPRVKSKLWGNDTSFVESNDNNGNSQATLNKEIQGTLVANHPILSNSQVEDDGIPPNNPQSDKSHDGLMSDMDYFKSKVTTEWSDSDSSDDENNDSESADEDDKDNHSHASEREETPKSGAQELQVVEGKEDTFQEDAANDKSQVNATEVEGLSSNPEDKKQVSESCRLFVRNLPYTTTEEELEEHFSQFGSVSQVHLVVDMETKRSKGIAYIHFSVPEFATRALEELDNSIFQGRLLHVMPAISRHSNNEENNVSKDQGSKTLKQRREEERKAAEAGGDTRAWNSLFMRPDTVVENVARKHGVSKSEFMDREANDLAVRIALGETQVISETKNAFKKAGVNVESLEELAKGKVDGAKRSNHVILVKNLPYGSTENELANMFGKFGSLEKTILPSTKTLALVVFLEPAEAKVAFRGLAYKRYKDAPLYLEWAPSNILIPKSTSDDNEMNSGIGEKDVKRQILEQDVERISDMDIDPDRIEARSLFVKNLNFKTTDESLKEHLSKHMKEGRILSVKVKKHLKNGKNVSMGFGFVEFDSTETATSVCNNLQGTILDSHALILQLCHAKNDGKVQKKVEKDKSSTKLLVRNVAFEATEKDLRQLFSPFGQIKSLRLPMKLGNHRGFAFVEYVTQQEAQNAITALSSTHLYGRHLVIERAKEGESLEELRARTAAQFNEHSGFQDANLSKKRKAIRMFDEENMKFGRFD 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03692 894 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 356 434 IPR000504 GO:0003723
Trre14g03692 894 MobiDBLite consensus disorder prediction 437 467 - -
Trre14g03692 894 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 771 847 IPR000504 GO:0003723
Trre14g03692 894 MobiDBLite consensus disorder prediction 328 342 - -
Trre14g03692 894 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 553 614 IPR000504 GO:0003723
Trre14g03692 894 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 773 840 IPR000504 GO:0003723
Trre14g03692 894 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 124 IPR000504 GO:0003723
Trre14g03692 894 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 358 428 IPR000504 GO:0003723
Trre14g03692 894 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 673 747 IPR000504 GO:0003723
Trre14g03692 894 CDD RRM5_RBM19_like 672 752 IPR034423 -
Trre14g03692 894 SUPERFAMILY RNA-binding domain, RBD 57 140 IPR035979 GO:0003676
Trre14g03692 894 SMART rrm2_1 357 430 IPR003954 GO:0003676
Trre14g03692 894 SMART rrm2_1 58 130 IPR003954 GO:0003676
Trre14g03692 894 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 355 460 - -
Trre14g03692 894 SUPERFAMILY RNA-binding domain, RBD 659 758 IPR035979 GO:0003676
Trre14g03692 894 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 551 623 IPR000504 GO:0003723
Trre14g03692 894 MobiDBLite consensus disorder prediction 289 308 - -
Trre14g03692 894 FunFam Nucleotide/nucleic acid binding protein 667 762 - -
Trre14g03692 894 SUPERFAMILY RNA-binding domain, RBD 348 445 IPR035979 GO:0003676
Trre14g03692 894 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 671 754 IPR000504 GO:0003723
Trre14g03692 894 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 134 IPR000504 GO:0003723
Trre14g03692 894 SMART rrm1_1 672 750 IPR000504 GO:0003723
Trre14g03692 894 SMART rrm1_1 552 619 IPR000504 GO:0003723
Trre14g03692 894 SMART rrm1_1 58 130 IPR000504 GO:0003723
Trre14g03692 894 SMART rrm1_1 772 843 IPR000504 GO:0003723
Trre14g03692 894 SMART rrm1_1 357 430 IPR000504 GO:0003723
Trre14g03692 894 MobiDBLite consensus disorder prediction 450 467 - -
Trre14g03692 894 MobiDBLite consensus disorder prediction 1 38 - -
Trre14g03692 894 CDD RRM4_RBM19_RRM3_MRD1 551 622 - -
Trre14g03692 894 MobiDBLite consensus disorder prediction 142 180 - -
Trre14g03692 894 FunFam Multiple RNA-binding domain-containing protein 1 542 644 - -
Trre14g03692 894 Gene3D - 668 761 IPR012677 -
Trre14g03692 894 SUPERFAMILY RNA-binding domain, RBD 548 636 IPR035979 GO:0003676
Trre14g03692 894 MobiDBLite consensus disorder prediction 235 254 - -
Trre14g03692 894 FunFam Multiple RNA-binding domain-containing protein 1 765 870 - -
Trre14g03692 894 CDD RRM6_RBM19_RRM5_MRD1 771 845 - -
Trre14g03692 894 SUPERFAMILY RNA-binding domain, RBD 766 852 IPR035979 GO:0003676
Trre14g03692 894 MobiDBLite consensus disorder prediction 235 351 - -
Trre14g03692 894 MobiDBLite consensus disorder prediction 9 29 - -
Trre14g03692 894 MobiDBLite consensus disorder prediction 144 180 - -
Trre14g03692 894 CDD RRM1_MRD1 57 132 - -
Trre14g03692 894 FunFam RNA-binding motif protein 19 56 155 - -
Trre14g03692 894 Gene3D - 543 647 IPR012677 -
Trre14g03692 894 Gene3D - 762 870 IPR012677 -
Trre14g03692 894 Gene3D - 34 177 IPR012677 -
Trre14g03692 894 MobiDBLite consensus disorder prediction 255 274 - -
Trre14g03692 894 Gene3D - 268 448 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03692 Trre-Chr14 45618898 45628509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03692 648 864 Eukaryotic Initiation Factors Gene Family AT4G34110 27.074 9.68e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03692 K14787 - gmx:100798742 1142.87