Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g03659 ATGGCTTCTACGCTTGTTCTCAGAAATTCTTCATCTTCTACTTCCAAACGTCTTTCTCCTTTTCTCTTCTCTTCTCAATTCCACACTTCACTCACTCGTTCGCCGCAATCTCAATCACCTCTCACCAATGATACTGCTACATCTTCTCCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCAATCCATGGTGGAGATCCATGGCTACTTTCACCAGAACAAAACCTCATGTTAACGTTGGAACTATTGGACACGTAGATCACGGGAAAACTACACTTACCGCTGCAATCACCAGAGTGCTTGCCGATGAAGGGAAAGCTAAAGCTGTTGCTTTTGATGAAATTGATAAGGCTCCTGAAGAGAAGAAGAGAGGAATTACAATTGCTACGGCTCATGTTGAGTATGAGACTGCAAAAAGGCATTATGCACATGTAGATTGTCCTGGACATGCCGATTATGTTAAAAATATGATTACTGGAGCTGCCCAAATGGATGGTGGCATCCTTGTTGTATCTGCACCTGATGGACCAATGCCTCAAACCAAGGAGCACATTCTTCTAGCTCGCCAAGTTGGTGTACCATCTCTTGTGTGCTTTTTAAATAAAGTGGACGCTGTTGATGATCCAGAGTTGTTAGAGCTTGTAGAAATGGAGCTCCGTGAGCTTCTGAGCTTCTACAAGTTCCCTGGGGATGATATCCCTATCATTAGAGGTTCAGCATTGTCTGCGTTACAAGGTACAAATGAAGAGATTGGAAGAAAGGCCATTCTAAAATTAATGGATGCTGTAGATGAGTACATTCCTGACCCTGTTCGCCAGCTTGACAAGCCTTTCTTGATGCCCATTGAAGATGTATTCTCAATTCAGGGACGAGGAACAGTTGCTACTGGTCGTGTTGAACAAGGAATCATCAAAGTTGGTGATGAAGTTGAGGTTTTGGGTCTGATGCAGGGTGGTCCTCTGAAAACAACAGTTACAGGAGTTGAGATGTTCAAGAAGATTTTGGATCAAGGACAAGCCGGTGATAATGTTGGTCTTCTTCTCCGTGGTCTAAAACGTGAGGACATTCAACGTGGTCAGGTCATTGCTAAGCCTGGTTCTGTAAAAACATCCAAGAAATTTGAGGCAGAGATATATGTACTCACAAAGGATGAGGGTGGGCGACACACTGCTTTCTTCTCCAACTATAGACCTCAGTTTTACTTGAGGACTGCTGATATCACTGGAAAAGTAGAGTTGCCTGAAAATGTTAAAATGGTTATGCCTGGAGACAATGTTACTGCCGTGTTTGAATTGATTTTACCTGTACCACTTGAACCAGGGCAAAGATTTGCCTTGAGAGAGGGCGGCAGAACCGTTGGTGCAGGTGTGGTGTCGAAAGTGATGAGCTGA 1389 0.4399 MASTLVLRNSSSSTSKRLSPFLFSSQFHTSLTRSPQSQSPLTNDTATSSPSSSSSSSSSSNPWWRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITRVLADEGKAKAVAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDDIPIIRGSALSALQGTNEEIGRKAILKLMDAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGIIKVGDEVEVLGLMQGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGQVIAKPGSVKTSKKFEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMVMPGDNVTAVFELILPVPLEPGQRFALREGGRTVGAGVVSKVMS 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g03659 462 Pfam Elongation factor Tu C-terminal domain 366 460 IPR004160 -
Trre14g03659 462 SUPERFAMILY Translation proteins 271 367 IPR009000 -
Trre14g03659 462 Pfam Elongation factor Tu GTP binding domain 74 267 IPR000795 GO:0003924|GO:0005525
Trre14g03659 462 MobiDBLite consensus disorder prediction 29 62 - -
Trre14g03659 462 CDD EF_Tu 75 269 IPR041709 -
Trre14g03659 462 Gene3D Translation factors 272 402 - -
Trre14g03659 462 PANTHER ELONGATION FACTOR TU-RELATED 62 461 - -
Trre14g03659 462 FunFam Elongation factor Tu 272 402 - -
Trre14g03659 462 Pfam Elongation factor Tu domain 2 291 361 IPR004161 GO:0005525
Trre14g03659 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 292 IPR027417 -
Trre14g03659 462 CDD EFTU_II 277 365 IPR033720 -
Trre14g03659 462 CDD EFTU_III 368 457 - -
Trre14g03659 462 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 115 130 IPR031157 -
Trre14g03659 462 Gene3D - 66 269 IPR027417 -
Trre14g03659 462 Gene3D Translation factors 406 461 - -
Trre14g03659 462 FunFam Elongation factor Tu 65 269 - -
Trre14g03659 462 NCBIfam small GTP-binding protein domain 77 213 IPR005225 GO:0005525
Trre14g03659 462 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 74 270 IPR000795 GO:0003924|GO:0005525
Trre14g03659 462 Hamap Elongation factor Tu [tuf]. 65 462 IPR004541 GO:0003746|GO:0005525|GO:0006414
Trre14g03659 462 PRINTS GTP-binding elongation factor signature 142 152 IPR000795 GO:0003924|GO:0005525
Trre14g03659 462 PRINTS GTP-binding elongation factor signature 158 169 IPR000795 GO:0003924|GO:0005525
Trre14g03659 462 PRINTS GTP-binding elongation factor signature 122 130 IPR000795 GO:0003924|GO:0005525
Trre14g03659 462 PRINTS GTP-binding elongation factor signature 195 204 IPR000795 GO:0003924|GO:0005525
Trre14g03659 462 PRINTS GTP-binding elongation factor signature 78 91 IPR000795 GO:0003924|GO:0005525
Trre14g03659 462 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 371 461 IPR009001 -
Trre14g03659 462 NCBIfam elongation factor Tu 66 461 IPR004541 GO:0003746|GO:0005525|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g03659 Trre-Chr14 45364010 45368161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g03659 72 460 Eukaryotic Initiation Factors Gene Family AT5G60390 30.734 9.23e-47 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g03659 K02358 - gmx:100791600 797.734